Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS20900

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS20890 and RS_RS20895 overlap by 4 nucleotidesRS_RS20895 and RS_RS20900 overlap by 4 nucleotidesRS_RS20900 and RS_RS20905 are separated by 203 nucleotidesRS_RS20905 and RS_RS20910 are separated by 105 nucleotides RS_RS20890: RS_RS20890 - alpha/beta hydrolase, at 995,479 to 996,396 _RS20890 RS_RS20895: RS_RS20895 - acyl carrier protein, at 996,393 to 996,704 _RS20895 RS_RS20900: RS_RS20900 - acyl-CoA desaturase, at 996,701 to 997,606 _RS20900 RS_RS20905: RS_RS20905 - hypothetical protein, at 997,810 to 998,031 _RS20905 RS_RS20910: RS_RS20910 - pyridoxal phosphate-dependent aminotransferase, at 998,137 to 999,324 _RS20910 Position (kb) 996 997 998Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 995.726 kb on - strand, within RS_RS20890at 995.726 kb on - strand, within RS_RS20890at 995.812 kb on + strand, within RS_RS20890at 996.073 kb on + strand, within RS_RS20890at 996.073 kb on + strand, within RS_RS20890at 996.085 kb on + strand, within RS_RS20890at 996.109 kb on + strand, within RS_RS20890at 996.109 kb on + strand, within RS_RS20890at 996.109 kb on + strand, within RS_RS20890at 996.109 kb on + strand, within RS_RS20890at 996.110 kb on - strand, within RS_RS20890at 996.110 kb on - strand, within RS_RS20890at 996.459 kb on + strand, within RS_RS20895at 996.459 kb on + strand, within RS_RS20895at 996.460 kb on - strand, within RS_RS20895at 996.613 kb on - strand, within RS_RS20895at 996.752 kb on + strandat 996.752 kb on + strandat 996.752 kb on + strandat 996.752 kb on + strandat 996.753 kb on - strandat 996.753 kb on - strandat 996.753 kb on - strandat 996.753 kb on - strandat 996.753 kb on - strandat 996.754 kb on - strandat 996.758 kb on + strandat 996.758 kb on + strandat 996.758 kb on + strandat 996.758 kb on + strandat 996.758 kb on + strandat 996.758 kb on + strandat 996.759 kb on - strandat 996.875 kb on + strand, within RS_RS20900at 996.875 kb on + strand, within RS_RS20900at 996.875 kb on + strand, within RS_RS20900at 996.875 kb on + strand, within RS_RS20900at 996.875 kb on + strand, within RS_RS20900at 996.876 kb on - strand, within RS_RS20900at 997.048 kb on + strand, within RS_RS20900at 997.067 kb on - strand, within RS_RS20900at 997.067 kb on - strand, within RS_RS20900at 997.124 kb on + strand, within RS_RS20900at 997.144 kb on + strand, within RS_RS20900at 997.179 kb on - strand, within RS_RS20900at 997.179 kb on - strand, within RS_RS20900at 997.193 kb on + strand, within RS_RS20900at 997.824 kb on + strandat 997.824 kb on + strandat 997.824 kb on + strandat 997.824 kb on + strandat 997.824 kb on + strandat 997.879 kb on + strand, within RS_RS20905at 997.879 kb on + strand, within RS_RS20905at 997.880 kb on - strand, within RS_RS20905at 997.880 kb on - strand, within RS_RS20905at 997.960 kb on + strand, within RS_RS20905at 997.960 kb on + strand, within RS_RS20905at 997.960 kb on + strand, within RS_RS20905at 997.960 kb on + strand, within RS_RS20905at 997.961 kb on - strand, within RS_RS20905at 997.961 kb on - strand, within RS_RS20905at 997.967 kb on - strand, within RS_RS20905at 997.975 kb on + strand, within RS_RS20905at 997.975 kb on + strand, within RS_RS20905at 997.976 kb on - strand, within RS_RS20905at 998.138 kb on + strandat 998.139 kb on - strandat 998.201 kb on + strandat 998.202 kb on - strandat 998.202 kb on - strandat 998.202 kb on - strandat 998.202 kb on - strandat 998.333 kb on + strand, within RS_RS20910at 998.333 kb on + strand, within RS_RS20910at 998.333 kb on + strand, within RS_RS20910at 998.333 kb on + strand, within RS_RS20910at 998.334 kb on - strand, within RS_RS20910at 998.334 kb on - strand, within RS_RS20910at 998.507 kb on + strand, within RS_RS20910at 998.507 kb on + strand, within RS_RS20910at 998.508 kb on - strand, within RS_RS20910at 998.508 kb on - strand, within RS_RS20910at 998.508 kb on - strand, within RS_RS20910at 998.508 kb on - strand, within RS_RS20910at 998.508 kb on - strand, within RS_RS20910

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
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995,726 - RS_RS20890 0.27 -0.5
995,726 - RS_RS20890 0.27 -0.2
995,812 + RS_RS20890 0.36 -0.4
996,073 + RS_RS20890 0.65 +0.5
996,073 + RS_RS20890 0.65 -0.2
996,085 + RS_RS20890 0.66 -1.5
996,109 + RS_RS20890 0.69 +0.1
996,109 + RS_RS20890 0.69 -1.0
996,109 + RS_RS20890 0.69 +0.8
996,109 + RS_RS20890 0.69 -1.3
996,110 - RS_RS20890 0.69 +0.2
996,110 - RS_RS20890 0.69 -0.9
996,459 + RS_RS20895 0.21 -0.1
996,459 + RS_RS20895 0.21 +1.4
996,460 - RS_RS20895 0.21 +0.9
996,613 - RS_RS20895 0.71 +1.1
996,752 + -0.1
996,752 + -1.6
996,752 + -1.1
996,752 + -1.0
996,753 - -0.5
996,753 - +0.3
996,753 - -0.9
996,753 - -1.1
996,753 - -0.2
996,754 - -0.7
996,758 + -0.1
996,758 + +0.5
996,758 + -0.9
996,758 + -0.1
996,758 + +0.5
996,758 + -0.6
996,759 - +0.4
996,875 + RS_RS20900 0.19 -0.0
996,875 + RS_RS20900 0.19 +0.4
996,875 + RS_RS20900 0.19 -0.3
996,875 + RS_RS20900 0.19 +2.4
996,875 + RS_RS20900 0.19 +1.4
996,876 - RS_RS20900 0.19 +0.1
997,048 + RS_RS20900 0.38 -0.4
997,067 - RS_RS20900 0.40 +0.7
997,067 - RS_RS20900 0.40 -1.3
997,124 + RS_RS20900 0.47 +1.6
997,144 + RS_RS20900 0.49 -0.4
997,179 - RS_RS20900 0.53 -0.7
997,179 - RS_RS20900 0.53 -0.2
997,193 + RS_RS20900 0.54 +0.1
997,824 + -0.1
997,824 + -1.3
997,824 + +0.0
997,824 + -0.0
997,824 + -0.0
997,879 + RS_RS20905 0.31 -0.6
997,879 + RS_RS20905 0.31 +0.4
997,880 - RS_RS20905 0.32 +0.1
997,880 - RS_RS20905 0.32 -0.3
997,960 + RS_RS20905 0.68 -0.2
997,960 + RS_RS20905 0.68 -0.7
997,960 + RS_RS20905 0.68 -0.2
997,960 + RS_RS20905 0.68 +1.2
997,961 - RS_RS20905 0.68 -0.4
997,961 - RS_RS20905 0.68 +0.3
997,967 - RS_RS20905 0.71 -0.2
997,975 + RS_RS20905 0.74 -0.5
997,975 + RS_RS20905 0.74 -0.4
997,976 - RS_RS20905 0.75 -2.2
998,138 + +0.3
998,139 - -0.6
998,201 + -0.3
998,202 - -2.5
998,202 - +0.8
998,202 - +0.1
998,202 - +1.8
998,333 + RS_RS20910 0.16 +0.6
998,333 + RS_RS20910 0.16 +0.9
998,333 + RS_RS20910 0.16 +0.4
998,333 + RS_RS20910 0.16 -0.3
998,334 - RS_RS20910 0.17 -0.2
998,334 - RS_RS20910 0.17 -3.6
998,507 + RS_RS20910 0.31 -0.7
998,507 + RS_RS20910 0.31 -0.8
998,508 - RS_RS20910 0.31 -0.5
998,508 - RS_RS20910 0.31 +0.4
998,508 - RS_RS20910 0.31 -0.2
998,508 - RS_RS20910 0.31 +0.1
998,508 - RS_RS20910 0.31 -0.0

Or see this region's nucleotide sequence