Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS20890

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS20885 and RS_RS20890 are separated by 14 nucleotidesRS_RS20890 and RS_RS20895 overlap by 4 nucleotidesRS_RS20895 and RS_RS20900 overlap by 4 nucleotides RS_RS20885: RS_RS20885 - iron-containing redox enzyme family protein, at 993,368 to 995,464 _RS20885 RS_RS20890: RS_RS20890 - alpha/beta hydrolase, at 995,479 to 996,396 _RS20890 RS_RS20895: RS_RS20895 - acyl carrier protein, at 996,393 to 996,704 _RS20895 RS_RS20900: RS_RS20900 - acyl-CoA desaturase, at 996,701 to 997,606 _RS20900 Position (kb) 995 996 997Strain fitness (log2 ratio) -2 -1 0 1 2at 994.598 kb on + strand, within RS_RS20885at 994.772 kb on + strand, within RS_RS20885at 994.772 kb on + strand, within RS_RS20885at 994.773 kb on - strand, within RS_RS20885at 994.775 kb on + strand, within RS_RS20885at 994.776 kb on - strand, within RS_RS20885at 994.776 kb on - strand, within RS_RS20885at 994.890 kb on - strand, within RS_RS20885at 994.995 kb on - strand, within RS_RS20885at 995.084 kb on + strand, within RS_RS20885at 995.133 kb on - strand, within RS_RS20885at 995.133 kb on - strand, within RS_RS20885at 995.402 kb on + strandat 995.402 kb on + strandat 995.402 kb on + strandat 995.403 kb on - strandat 995.403 kb on - strandat 995.427 kb on + strandat 995.427 kb on + strandat 995.542 kb on + strandat 995.542 kb on + strandat 995.543 kb on - strandat 995.726 kb on - strand, within RS_RS20890at 995.726 kb on - strand, within RS_RS20890at 995.812 kb on + strand, within RS_RS20890at 996.073 kb on + strand, within RS_RS20890at 996.073 kb on + strand, within RS_RS20890at 996.085 kb on + strand, within RS_RS20890at 996.109 kb on + strand, within RS_RS20890at 996.109 kb on + strand, within RS_RS20890at 996.109 kb on + strand, within RS_RS20890at 996.109 kb on + strand, within RS_RS20890at 996.110 kb on - strand, within RS_RS20890at 996.110 kb on - strand, within RS_RS20890at 996.459 kb on + strand, within RS_RS20895at 996.459 kb on + strand, within RS_RS20895at 996.460 kb on - strand, within RS_RS20895at 996.613 kb on - strand, within RS_RS20895at 996.752 kb on + strandat 996.752 kb on + strandat 996.752 kb on + strandat 996.752 kb on + strandat 996.753 kb on - strandat 996.753 kb on - strandat 996.753 kb on - strandat 996.753 kb on - strandat 996.753 kb on - strandat 996.754 kb on - strandat 996.758 kb on + strandat 996.758 kb on + strandat 996.758 kb on + strandat 996.758 kb on + strandat 996.758 kb on + strandat 996.758 kb on + strandat 996.759 kb on - strandat 996.875 kb on + strand, within RS_RS20900at 996.875 kb on + strand, within RS_RS20900at 996.875 kb on + strand, within RS_RS20900at 996.875 kb on + strand, within RS_RS20900at 996.875 kb on + strand, within RS_RS20900at 996.876 kb on - strand, within RS_RS20900at 997.048 kb on + strand, within RS_RS20900at 997.067 kb on - strand, within RS_RS20900at 997.067 kb on - strand, within RS_RS20900at 997.124 kb on + strand, within RS_RS20900at 997.144 kb on + strand, within RS_RS20900at 997.179 kb on - strand, within RS_RS20900at 997.179 kb on - strand, within RS_RS20900at 997.193 kb on + strand, within RS_RS20900

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
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994,598 + RS_RS20885 0.59 +0.1
994,772 + RS_RS20885 0.67 -0.3
994,772 + RS_RS20885 0.67 -1.0
994,773 - RS_RS20885 0.67 +0.4
994,775 + RS_RS20885 0.67 -0.2
994,776 - RS_RS20885 0.67 +0.1
994,776 - RS_RS20885 0.67 -0.2
994,890 - RS_RS20885 0.73 +0.4
994,995 - RS_RS20885 0.78 -0.1
995,084 + RS_RS20885 0.82 -1.8
995,133 - RS_RS20885 0.84 -0.0
995,133 - RS_RS20885 0.84 +0.8
995,402 + -1.5
995,402 + -0.7
995,402 + -0.2
995,403 - -0.6
995,403 - -0.7
995,427 + +1.1
995,427 + +0.2
995,542 + +0.3
995,542 + -0.6
995,543 - -0.6
995,726 - RS_RS20890 0.27 -0.5
995,726 - RS_RS20890 0.27 -0.2
995,812 + RS_RS20890 0.36 -0.4
996,073 + RS_RS20890 0.65 +0.5
996,073 + RS_RS20890 0.65 -0.2
996,085 + RS_RS20890 0.66 -1.5
996,109 + RS_RS20890 0.69 +0.1
996,109 + RS_RS20890 0.69 -1.0
996,109 + RS_RS20890 0.69 +0.8
996,109 + RS_RS20890 0.69 -1.3
996,110 - RS_RS20890 0.69 +0.2
996,110 - RS_RS20890 0.69 -0.9
996,459 + RS_RS20895 0.21 -0.1
996,459 + RS_RS20895 0.21 +1.4
996,460 - RS_RS20895 0.21 +0.9
996,613 - RS_RS20895 0.71 +1.1
996,752 + -0.1
996,752 + -1.6
996,752 + -1.1
996,752 + -1.0
996,753 - -0.5
996,753 - +0.3
996,753 - -0.9
996,753 - -1.1
996,753 - -0.2
996,754 - -0.7
996,758 + -0.1
996,758 + +0.5
996,758 + -0.9
996,758 + -0.1
996,758 + +0.5
996,758 + -0.6
996,759 - +0.4
996,875 + RS_RS20900 0.19 -0.0
996,875 + RS_RS20900 0.19 +0.4
996,875 + RS_RS20900 0.19 -0.3
996,875 + RS_RS20900 0.19 +2.4
996,875 + RS_RS20900 0.19 +1.4
996,876 - RS_RS20900 0.19 +0.1
997,048 + RS_RS20900 0.38 -0.4
997,067 - RS_RS20900 0.40 +0.7
997,067 - RS_RS20900 0.40 -1.3
997,124 + RS_RS20900 0.47 +1.6
997,144 + RS_RS20900 0.49 -0.4
997,179 - RS_RS20900 0.53 -0.7
997,179 - RS_RS20900 0.53 -0.2
997,193 + RS_RS20900 0.54 +0.1

Or see this region's nucleotide sequence