Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS23625 and RALBFv3_RS23630 are separated by 727 nucleotides
RALBFv3_RS23625: RALBFv3_RS23625 - DUF3761 domain-containing protein, at 509,081 to 509,380
_RS23625
RALBFv3_RS23630: RALBFv3_RS23630 - hypothetical protein, at 510,108 to 510,365
_RS23630
Position (kb) 509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 508.284 kb on + strand at 508.361 kb on - strand at 508.474 kb on - strand at 508.791 kb on + strand at 508.890 kb on + strand at 509.058 kb on + strand at 509.058 kb on + strand at 509.175 kb on - strand, within RALBFv3_RS23625 at 509.316 kb on - strand, within RALBFv3_RS23625 at 509.482 kb on - strand at 509.482 kb on - strand at 509.574 kb on - strand at 509.606 kb on - strand at 509.608 kb on + strand at 509.611 kb on + strand at 509.611 kb on + strand at 509.611 kb on + strand at 509.611 kb on + strand at 509.612 kb on - strand at 509.612 kb on - strand at 509.620 kb on + strand at 509.620 kb on + strand at 509.620 kb on + strand at 509.710 kb on + strand at 509.710 kb on + strand at 509.743 kb on + strand at 509.795 kb on + strand at 509.796 kb on - strand at 509.801 kb on + strand at 509.842 kb on + strand at 509.842 kb on + strand at 509.843 kb on - strand at 509.843 kb on - strand at 509.844 kb on + strand at 509.844 kb on + strand at 509.857 kb on + strand at 510.043 kb on - strand at 510.043 kb on - strand at 510.062 kb on + strand at 510.210 kb on + strand, within RALBFv3_RS23630 at 510.211 kb on - strand, within RALBFv3_RS23630 at 510.211 kb on - strand, within RALBFv3_RS23630 at 510.211 kb on - strand, within RALBFv3_RS23630 at 510.211 kb on - strand, within RALBFv3_RS23630 at 510.211 kb on - strand, within RALBFv3_RS23630
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 508,284 + +0.8 508,361 - -0.1 508,474 - -0.7 508,791 + -0.3 508,890 + +0.2 509,058 + -0.8 509,058 + -0.0 509,175 - RALBFv3_RS23625 0.31 -0.9 509,316 - RALBFv3_RS23625 0.78 -0.1 509,482 - +1.1 509,482 - -1.4 509,574 - -0.0 509,606 - +0.4 509,608 + -1.4 509,611 + -1.5 509,611 + -1.2 509,611 + -3.6 509,611 + -0.8 509,612 - -0.3 509,612 - -0.3 509,620 + +0.5 509,620 + +0.9 509,620 + +0.3 509,710 + -0.1 509,710 + +0.2 509,743 + +1.0 509,795 + +0.9 509,796 - +1.6 509,801 + +0.9 509,842 + -1.2 509,842 + -0.1 509,843 - +0.6 509,843 - -0.5 509,844 + -0.1 509,844 + -0.7 509,857 + +0.0 510,043 - +0.1 510,043 - +0.6 510,062 + +2.0 510,210 + RALBFv3_RS23630 0.40 +0.5 510,211 - RALBFv3_RS23630 0.40 -1.2 510,211 - RALBFv3_RS23630 0.40 -0.8 510,211 - RALBFv3_RS23630 0.40 -0.4 510,211 - RALBFv3_RS23630 0.40 -0.1 510,211 - RALBFv3_RS23630 0.40 +0.0
Or see this region's nucleotide sequence