Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS19740

Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS19735 and RALBFv3_RS19740 are separated by 32 nucleotidesRALBFv3_RS19740 and RALBFv3_RS19745 are separated by 90 nucleotides RALBFv3_RS19735: RALBFv3_RS19735 - glucarate dehydratase, at 1,105,991 to 1,107,400 _RS19735 RALBFv3_RS19740: RALBFv3_RS19740 - MFS transporter, at 1,107,433 to 1,108,785 _RS19740 RALBFv3_RS19745: RALBFv3_RS19745 - aldehyde dehydrogenase (NADP(+)), at 1,108,876 to 1,110,462 _RS19745 Position (kb) 1107 1108 1109Strain fitness (log2 ratio) -1 0 1 2at 1106.874 kb on + strand, within RALBFv3_RS19735at 1106.874 kb on + strand, within RALBFv3_RS19735at 1106.874 kb on + strand, within RALBFv3_RS19735at 1106.875 kb on - strand, within RALBFv3_RS19735at 1107.310 kb on + strandat 1107.310 kb on + strandat 1107.310 kb on + strandat 1107.310 kb on + strandat 1107.310 kb on + strandat 1107.484 kb on - strandat 1107.558 kb on + strandat 1107.558 kb on + strandat 1107.559 kb on - strandat 1107.560 kb on + strandat 1107.744 kb on - strand, within RALBFv3_RS19740at 1107.744 kb on - strand, within RALBFv3_RS19740at 1107.944 kb on + strand, within RALBFv3_RS19740at 1107.993 kb on - strand, within RALBFv3_RS19740at 1107.993 kb on - strand, within RALBFv3_RS19740at 1108.004 kb on + strand, within RALBFv3_RS19740at 1108.005 kb on - strand, within RALBFv3_RS19740at 1108.005 kb on - strand, within RALBFv3_RS19740at 1108.046 kb on + strand, within RALBFv3_RS19740at 1108.046 kb on + strand, within RALBFv3_RS19740at 1108.047 kb on - strand, within RALBFv3_RS19740at 1108.121 kb on + strand, within RALBFv3_RS19740at 1108.122 kb on - strand, within RALBFv3_RS19740at 1108.229 kb on + strand, within RALBFv3_RS19740at 1108.509 kb on - strand, within RALBFv3_RS19740at 1108.509 kb on - strand, within RALBFv3_RS19740at 1108.568 kb on + strand, within RALBFv3_RS19740at 1108.568 kb on + strand, within RALBFv3_RS19740at 1108.569 kb on - strand, within RALBFv3_RS19740at 1109.434 kb on - strand, within RALBFv3_RS19745at 1109.436 kb on - strand, within RALBFv3_RS19745at 1109.598 kb on - strand, within RALBFv3_RS19745at 1109.598 kb on - strand, within RALBFv3_RS19745at 1109.598 kb on - strand, within RALBFv3_RS19745

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,106,874 + RALBFv3_RS19735 0.63 -0.6
1,106,874 + RALBFv3_RS19735 0.63 +0.7
1,106,874 + RALBFv3_RS19735 0.63 +0.4
1,106,875 - RALBFv3_RS19735 0.63 +0.1
1,107,310 + -0.8
1,107,310 + +0.1
1,107,310 + +0.9
1,107,310 + +0.5
1,107,310 + +0.1
1,107,484 - +1.1
1,107,558 + +0.5
1,107,558 + +0.4
1,107,559 - +0.1
1,107,560 + -0.6
1,107,744 - RALBFv3_RS19740 0.23 -0.8
1,107,744 - RALBFv3_RS19740 0.23 +0.1
1,107,944 + RALBFv3_RS19740 0.38 +0.2
1,107,993 - RALBFv3_RS19740 0.41 +0.5
1,107,993 - RALBFv3_RS19740 0.41 +0.8
1,108,004 + RALBFv3_RS19740 0.42 +2.0
1,108,005 - RALBFv3_RS19740 0.42 +1.4
1,108,005 - RALBFv3_RS19740 0.42 +0.3
1,108,046 + RALBFv3_RS19740 0.45 +0.2
1,108,046 + RALBFv3_RS19740 0.45 +1.1
1,108,047 - RALBFv3_RS19740 0.45 -0.8
1,108,121 + RALBFv3_RS19740 0.51 -0.4
1,108,122 - RALBFv3_RS19740 0.51 -0.3
1,108,229 + RALBFv3_RS19740 0.59 -0.1
1,108,509 - RALBFv3_RS19740 0.80 -0.5
1,108,509 - RALBFv3_RS19740 0.80 -0.8
1,108,568 + RALBFv3_RS19740 0.84 -1.3
1,108,568 + RALBFv3_RS19740 0.84 +0.7
1,108,569 - RALBFv3_RS19740 0.84 -0.3
1,109,434 - RALBFv3_RS19745 0.35 -0.4
1,109,436 - RALBFv3_RS19745 0.35 -1.2
1,109,598 - RALBFv3_RS19745 0.45 -0.3
1,109,598 - RALBFv3_RS19745 0.45 -0.8
1,109,598 - RALBFv3_RS19745 0.45 -1.3

Or see this region's nucleotide sequence