Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS12085

Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
2,666,110	-		RALBFv3_RS12080	0.16	+0.1
2,666,111	-		RALBFv3_RS12080	0.16	+1.1
2,666,145	-		RALBFv3_RS12080	0.20	+0.2
2,666,145	-		RALBFv3_RS12080	0.20	+0.4
2,666,145	-		RALBFv3_RS12080	0.20	-0.1
2,666,146	+		RALBFv3_RS12080	0.20	-0.6
2,666,146	+		RALBFv3_RS12080	0.20	-0.6
2,666,146	+		RALBFv3_RS12080	0.20	+0.6
2,666,146	+		RALBFv3_RS12080	0.20	-1.8
2,666,147	-		RALBFv3_RS12080	0.20	-1.2
2,666,147	-		RALBFv3_RS12080	0.20	+1.9
2,666,177	+		RALBFv3_RS12080	0.23	-0.2
2,666,178	-		RALBFv3_RS12080	0.23	+0.5
2,666,247	+		RALBFv3_RS12080	0.30	-0.6
2,666,247	+		RALBFv3_RS12080	0.30	-1.7
2,666,247	+		RALBFv3_RS12080	0.30	-1.9
2,666,247	+		RALBFv3_RS12080	0.30	+0.1
2,666,247	+		RALBFv3_RS12080	0.30	-1.2
2,666,247	+		RALBFv3_RS12080	0.30	-1.5
2,666,247	+		RALBFv3_RS12080	0.30	+0.0
2,666,248	-		RALBFv3_RS12080	0.31	+0.3
2,666,248	-		RALBFv3_RS12080	0.31	-1.4
2,666,248	-		RALBFv3_RS12080	0.31	-1.4
2,666,248	-		RALBFv3_RS12080	0.31	+0.7
2,666,248	-		RALBFv3_RS12080	0.31	+4.0
2,666,251	+		RALBFv3_RS12080	0.31	-0.3
2,666,251	+		RALBFv3_RS12080	0.31	-2.0
2,666,252	-		RALBFv3_RS12080	0.31	+0.8
2,666,252	-		RALBFv3_RS12080	0.31	+0.1
2,666,293	+		RALBFv3_RS12080	0.35	+0.1
2,666,447	+		RALBFv3_RS12080	0.52	+1.1
2,666,447	+		RALBFv3_RS12080	0.52	-0.3
2,666,448	-		RALBFv3_RS12080	0.52	-0.2
2,666,457	+		RALBFv3_RS12080	0.53	+0.4
2,666,457	+		RALBFv3_RS12080	0.53	+0.8
2,666,458	-		RALBFv3_RS12080	0.53	-1.4
2,666,458	-		RALBFv3_RS12080	0.53	+1.2
2,666,458	-		RALBFv3_RS12080	0.53	+2.5
2,666,539	+		RALBFv3_RS12080	0.62	-0.9
2,666,539	+		RALBFv3_RS12080	0.62	+0.9
2,666,539	+		RALBFv3_RS12080	0.62	-0.1
2,666,540	-		RALBFv3_RS12080	0.62	+0.1
2,666,540	-		RALBFv3_RS12080	0.62	-0.4
2,666,657	-		RALBFv3_RS12080	0.74	+0.1
2,666,665	-		RALBFv3_RS12080	0.75	-2.2
2,666,706	+		RALBFv3_RS12080	0.79	+2.2
2,666,706	+		RALBFv3_RS12080	0.79	+1.8
2,666,706	+		RALBFv3_RS12080	0.79	-1.3
2,666,706	+		RALBFv3_RS12080	0.79	-0.6
2,666,706	+		RALBFv3_RS12080	0.79	-2.9
2,666,706	+		RALBFv3_RS12080	0.79	-0.3
2,666,707	-		RALBFv3_RS12080	0.79	+0.8
2,666,707	-		RALBFv3_RS12080	0.79	-0.0
2,666,707	-		RALBFv3_RS12080	0.79	-0.2
2,666,707	-		RALBFv3_RS12080	0.79	-3.0
2,666,710	+		RALBFv3_RS12080	0.80	+0.3
2,666,710	+		RALBFv3_RS12080	0.80	+0.6
2,666,710	+		RALBFv3_RS12080	0.80	+0.7
2,666,710	+		RALBFv3_RS12080	0.80	-0.6
2,666,710	+		RALBFv3_RS12080	0.80	-0.7
2,666,710	+		RALBFv3_RS12080	0.80	+1.7
2,666,710	+		RALBFv3_RS12080	0.80	+1.1
2,666,710	+		RALBFv3_RS12080	0.80	-0.2
2,666,710	+		RALBFv3_RS12080	0.80	-1.2
2,666,710	+		RALBFv3_RS12080	0.80	-0.3
2,666,710	+		RALBFv3_RS12080	0.80	-0.0
2,666,710	+		RALBFv3_RS12080	0.80	+1.1
2,666,710	+		RALBFv3_RS12080	0.80	+1.7
2,666,710	+		RALBFv3_RS12080	0.80	+0.4
2,666,710	+		RALBFv3_RS12080	0.80	-1.5
2,666,710	+		RALBFv3_RS12080	0.80	-1.0
2,666,710	+		RALBFv3_RS12080	0.80	-0.4
2,666,711	-		RALBFv3_RS12080	0.80	-1.0
2,666,711	-		RALBFv3_RS12080	0.80	+0.0
2,666,711	-		RALBFv3_RS12080	0.80	-1.4
2,666,711	-		RALBFv3_RS12080	0.80	+1.1
2,666,711	-		RALBFv3_RS12080	0.80	+0.5
2,666,711	-		RALBFv3_RS12080	0.80	+1.3
2,666,711	-		RALBFv3_RS12080	0.80	-0.9
2,666,711	-		RALBFv3_RS12080	0.80	+1.1
2,666,711	-				+1.1
2,666,739	-		RALBFv3_RS12080	0.83	+1.8
2,666,785	+		RALBFv3_RS12080	0.88	+0.7
2,666,785	+		RALBFv3_RS12080	0.88	+2.1
2,666,786	-		RALBFv3_RS12080	0.88	+0.4
2,666,786	-		RALBFv3_RS12080	0.88	-1.3
2,666,786	-		RALBFv3_RS12080	0.88	+0.4
2,666,786	-		RALBFv3_RS12080	0.88	-0.5
2,666,786	-		RALBFv3_RS12080	0.88	+0.3
2,666,786	-		RALBFv3_RS12080	0.88	+1.1
2,666,786	-		RALBFv3_RS12080	0.88	+1.1
2,666,793	+		RALBFv3_RS12080	0.89	+1.1
2,666,793	+		RALBFv3_RS12080	0.89	-0.7
2,666,793	+		RALBFv3_RS12080	0.89	+0.4
2,666,794	-		RALBFv3_RS12080	0.89	+1.0
2,666,794	-		RALBFv3_RS12080	0.89	+0.4
2,666,813	+				-0.5
2,666,813	+				+0.1
2,666,813	+				-1.3
2,666,813	+				+0.2
2,666,813	+				+0.5
2,666,814	-				-0.2
2,666,814	-				+0.1
2,666,814	-				+0.1
2,666,849	+				+0.2
2,666,849	+				+0.7
2,666,858	+				-0.6
2,666,858	+				-0.3
2,666,858	+				-0.6
2,666,858	+				+2.1
2,666,858	+				-0.3
2,666,858	+				-0.0
2,666,858	+				+1.6
2,666,858	+				-1.0
2,666,858	+				-0.3
2,666,859	-				+2.1
2,666,859	-				-0.8
2,666,859	-				-0.2
2,666,859	-				-0.7
2,666,859	-				+0.6
2,666,859	-				+1.4
2,666,859	-				-1.4
2,666,859	-				+0.7
2,666,859	-				+0.5
2,666,859	-				-0.3
2,666,883	+				-0.9
2,666,884	-				-2.3
2,666,884	-				-2.4
2,666,899	+				-1.2
2,666,899	+				-1.0
2,666,899	+				+0.1
2,666,899	+				-0.3
2,666,899	+				-0.0
2,666,899	+				+0.1
2,666,899	+				+1.5
2,666,899	+				-0.7
2,666,899	+				-0.0
2,666,899	+				-1.0
2,666,900	-				-0.5
2,666,900	-				-0.9
2,666,900	-				-0.1
2,666,900	-				-0.6
2,666,900	-				-0.6
2,666,900	-				+1.8
2,666,937	+				+0.5
2,666,937	+				-1.6
2,666,937	+				+0.3
2,666,938	-				-0.2
2,666,938	-				-0.4
2,666,938	-				-0.1
2,666,938	-				+0.1
2,666,938	-				+0.0
2,667,045	+				+0.1
2,667,046	-				-1.0
2,667,046	-				+0.8
2,667,047	-				+2.3
2,667,049	+				+1.1
2,667,052	+				+0.1
2,667,053	-				-1.4
2,667,082	-				-0.4
2,667,128	+				+1.1
2,667,128	+				+1.2
2,667,128	+				+1.3
2,667,128	+				-1.4
2,667,128	+				-0.9
2,667,129	-				+0.1
2,667,283	+		RALBFv3_RS12085	0.29	-1.2
2,667,284	-		RALBFv3_RS12085	0.29	+1.1
2,667,303	+		RALBFv3_RS12085	0.32	-0.6
2,667,303	+		RALBFv3_RS12085	0.32	-0.9
2,667,303	+		RALBFv3_RS12085	0.32	-0.3
2,667,303	+		RALBFv3_RS12085	0.32	-1.0
2,667,303	+		RALBFv3_RS12085	0.32	+2.0
2,667,303	+		RALBFv3_RS12085	0.32	-0.7
2,667,303	+		RALBFv3_RS12085	0.32	+0.7
2,667,303	+		RALBFv3_RS12085	0.32	-1.2
2,667,303	+		RALBFv3_RS12085	0.32	-0.4
2,667,303	+		RALBFv3_RS12085	0.32	-1.6
2,667,303	+		RALBFv3_RS12085	0.32	-0.3
2,667,303	+		RALBFv3_RS12085	0.32	-0.2
2,667,303	+		RALBFv3_RS12085	0.32	+0.5
2,667,303	+		RALBFv3_RS12085	0.32	+0.7
2,667,303	+		RALBFv3_RS12085	0.32	-1.2
2,667,303	+		RALBFv3_RS12085	0.32	+0.1
2,667,303	+		RALBFv3_RS12085	0.32	+1.3
2,667,304	-		RALBFv3_RS12085	0.32	+1.1
2,667,304	-		RALBFv3_RS12085	0.32	+0.1
2,667,304	-		RALBFv3_RS12085	0.32	+1.1
2,667,304	-		RALBFv3_RS12085	0.32	+1.1
2,667,304	-		RALBFv3_RS12085	0.32	+1.1
2,667,304	-		RALBFv3_RS12085	0.32	+1.1
2,667,304	-		RALBFv3_RS12085	0.32	+1.1
2,667,304	-		RALBFv3_RS12085	0.32	+0.1
2,667,304	-		RALBFv3_RS12085	0.32	+1.1
2,667,304	-		RALBFv3_RS12085	0.32	+0.1
2,667,304	-		RALBFv3_RS12085	0.32	-1.2
2,667,304	-		RALBFv3_RS12085	0.32	+1.1
2,667,304	-		RALBFv3_RS12085	0.32	-1.7
2,667,304	-		RALBFv3_RS12085	0.32	-1.4
2,667,304	-		RALBFv3_RS12085	0.32	+0.1
2,667,304	-		RALBFv3_RS12085	0.32	+1.1
2,667,307	+		RALBFv3_RS12085	0.33	-0.6
2,667,307	+		RALBFv3_RS12085	0.33	-0.8
2,667,307	+		RALBFv3_RS12085	0.33	-0.6
2,667,307	+		RALBFv3_RS12085	0.33	-0.7
2,667,307	+		RALBFv3_RS12085	0.33	-0.2
2,667,307	+		RALBFv3_RS12085	0.33	-1.9
2,667,307	+		RALBFv3_RS12085	0.33	-0.4
2,667,307	+		RALBFv3_RS12085	0.33	-0.6
2,667,307	+		RALBFv3_RS12085	0.33	-2.2
2,667,307	+		RALBFv3_RS12085	0.33	+0.0
2,667,307	+		RALBFv3_RS12085	0.33	-0.3
2,667,307	+		RALBFv3_RS12085	0.33	+1.0
2,667,307	+		RALBFv3_RS12085	0.33	-2.1
2,667,308	-		RALBFv3_RS12085	0.33	+1.1
2,667,308	-		RALBFv3_RS12085	0.33	+0.1
2,667,308	-		RALBFv3_RS12085	0.33	+1.1
2,667,308	-		RALBFv3_RS12085	0.33	+0.1
2,667,308	-		RALBFv3_RS12085	0.33	+0.1
2,667,308	-		RALBFv3_RS12085	0.33	+1.1
2,667,343	+		RALBFv3_RS12085	0.39	-0.3
2,667,343	+		RALBFv3_RS12085	0.39	-1.1
2,667,343	+		RALBFv3_RS12085	0.39	-0.2
2,667,344	-		RALBFv3_RS12085	0.39	+1.1
2,667,344	-		RALBFv3_RS12085	0.39	+1.1
2,667,372	+		RALBFv3_RS12085	0.44	+1.6
2,667,372	+		RALBFv3_RS12085	0.44	-0.1
2,667,372	+		RALBFv3_RS12085	0.44	+1.1
2,667,372	+		RALBFv3_RS12085	0.44	+0.3
2,667,372	+		RALBFv3_RS12085	0.44	-0.2
2,667,372	+		RALBFv3_RS12085	0.44	-0.5
2,667,372	+		RALBFv3_RS12085	0.44	-1.0
2,667,372	+		RALBFv3_RS12085	0.44	-0.0
2,667,372	+		RALBFv3_RS12085	0.44	-0.1
2,667,372	+		RALBFv3_RS12085	0.44	-0.4
2,667,373	-		RALBFv3_RS12085	0.44	+1.1
2,667,373	-		RALBFv3_RS12085	0.44	+0.1
2,667,373	-		RALBFv3_RS12085	0.44	+0.1
2,667,373	-		RALBFv3_RS12085	0.44	+0.1
2,667,373	-		RALBFv3_RS12085	0.44	+1.1
2,667,493	+		RALBFv3_RS12085	0.64	-0.3
2,667,494	-		RALBFv3_RS12085	0.64	+1.1
2,667,495	+		RALBFv3_RS12085	0.64	-0.1
2,667,495	+		RALBFv3_RS12085	0.64	-0.8
2,667,495	+		RALBFv3_RS12085	0.64	-0.2
2,667,495	+		RALBFv3_RS12085	0.64	-0.6
2,667,495	+		RALBFv3_RS12085	0.64	-0.1
2,667,495	+		RALBFv3_RS12085	0.64	-1.7
2,667,496	-		RALBFv3_RS12085	0.64	+1.1
2,667,496	-		RALBFv3_RS12085	0.64	+0.1
2,667,496	-		RALBFv3_RS12085	0.64	-0.4
2,667,496	-		RALBFv3_RS12085	0.64	+0.1
2,667,496	-		RALBFv3_RS12085	0.64	+1.1
2,667,502	+		RALBFv3_RS12085	0.65	+0.7
2,667,502	+		RALBFv3_RS12085	0.65	-0.1
2,667,502	+		RALBFv3_RS12085	0.65	-1.3
2,667,503	-		RALBFv3_RS12085	0.66	+1.1
2,667,503	-		RALBFv3_RS12085	0.66	-0.5
2,667,503	-		RALBFv3_RS12085	0.66	+0.1
2,667,503	-		RALBFv3_RS12085	0.66	+1.1
2,667,550	+		RALBFv3_RS12085	0.73	+5.3
2,667,580	+		RALBFv3_RS12085	0.78	+1.3
2,667,580	+		RALBFv3_RS12085	0.78	+0.9
2,667,581	-		RALBFv3_RS12085	0.79	+0.1
2,667,581	-		RALBFv3_RS12085	0.79	+1.1
2,667,661	+				-1.9
2,667,661	+				-1.0
2,667,661	+				+0.1
2,667,661	+				+0.5
2,667,661	+				+0.0
2,667,662	-				+0.1
2,667,662	-				+1.1
2,667,662	-				+0.1
2,667,662	-				+0.1
2,667,662	-				+2.9
2,667,662	-				+1.1
2,667,662	-				+0.1
2,667,700	+				+0.7
2,667,701	-				+0.1
2,667,705	+				-0.9
2,667,707	+				-1.2
2,667,707	+				+0.0
2,667,707	+				+0.2
2,667,707	+				-0.8
2,667,707	+				+0.2
2,667,707	+				-1.2
2,667,707	+				-0.5
2,667,708	-				+0.1
2,667,708	-				-0.5
2,667,708	-				+0.5
2,667,708	-				-0.8
2,667,708	-				+1.1
2,667,708	-				-1.5
2,667,708	-				-0.2
2,667,708	-				+0.0
2,667,816	+		RALBFv3_RS23980	0.46	+0.3
2,667,816	+		RALBFv3_RS23980	0.46	+0.2
2,667,816	+		RALBFv3_RS23980	0.46	+1.3
2,667,816	+		RALBFv3_RS23980	0.46	+0.4
2,667,817	-		RALBFv3_RS23980	0.47	+0.5
2,667,817	-		RALBFv3_RS23980	0.47	-1.6
2,667,817	-		RALBFv3_RS23980	0.47	-1.7
2,667,817	-		RALBFv3_RS23980	0.47	-1.2
2,667,817	-		RALBFv3_RS23980	0.47	+0.3
2,667,908	+		RALBFv3_RS23980	0.84	-0.4
2,667,908	+		RALBFv3_RS23980	0.84	+0.2
2,667,909	-		RALBFv3_RS23980	0.84	+2.7
2,667,909	-		RALBFv3_RS23980	0.84	-0.4
2,667,909	-		RALBFv3_RS23980	0.84	-0.7
2,667,909	-		RALBFv3_RS23980	0.84	-1.3
2,667,909	-		RALBFv3_RS23980	0.84	-0.9
2,667,931	+				-0.9
2,667,931	+				+0.6
2,667,932	-				-0.6
2,667,932	-				-0.7
2,667,932	-				-1.2
2,667,964	+				-0.4
2,667,964	+				+1.7
2,667,964	+				-1.9
2,667,964	+				+1.2
2,667,964	+				+0.7
2,667,964	+				-1.0
2,667,964	+				+0.1
2,667,965	-				+0.4
2,667,965	-				-0.2
2,667,965	-				+0.6
2,667,965	-				-1.7
2,667,965	-				-0.2
2,667,965	-				+0.5
2,667,965	-				+1.7
2,667,965	-				-0.5
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2,667,990	+				-1.1
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2,668,154	+				-0.7
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2,668,158	+				+1.4
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2,668,224	-				-1.7
2,668,334	+		RALBFv3_RS12090	0.10	-1.2
2,668,334	+		RALBFv3_RS12090	0.10	+1.7
2,668,334	+		RALBFv3_RS12090	0.10	+0.3
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2,668,367	-		RALBFv3_RS12090	0.14	-0.6
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2,668,406	+		RALBFv3_RS12090	0.19	-0.6
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2,668,407	-		RALBFv3_RS12090	0.19	-1.1
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2,668,407	-		RALBFv3_RS12090	0.19	+0.9
2,668,463	+		RALBFv3_RS12090	0.26	+2.0
2,668,463	+		RALBFv3_RS12090	0.26	+0.3
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2,668,464	-		RALBFv3_RS12090	0.26	+0.7
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2,668,464	-		RALBFv3_RS12090	0.26	+0.9
2,668,522	+		RALBFv3_RS12090	0.34	-1.4
2,668,523	-		RALBFv3_RS12090	0.34	-0.9
2,668,645	+		RALBFv3_RS12090	0.49	-1.3
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2,668,645	+		RALBFv3_RS12090	0.49	+0.5
2,668,645	+		RALBFv3_RS12090	0.49	+0.6
2,668,646	-		RALBFv3_RS12090	0.49	-2.0
2,668,646	-		RALBFv3_RS12090	0.49	+0.3
2,668,646	-		RALBFv3_RS12090	0.49	-0.5
2,668,705	+		RALBFv3_RS12090	0.56	-2.0
2,668,705	+		RALBFv3_RS12090	0.56	+0.4
2,668,706	-		RALBFv3_RS12090	0.56	-0.6
2,668,706	-		RALBFv3_RS12090	0.56	+1.1
2,668,706	-		RALBFv3_RS12090	0.56	-1.2
2,668,706	-		RALBFv3_RS12090	0.56	+0.3
2,668,706	-		RALBFv3_RS12090	0.56	+0.3
2,668,706	-		RALBFv3_RS12090	0.56	+0.8
2,668,706	-		RALBFv3_RS12090	0.56	+0.4
2,668,706	-		RALBFv3_RS12090	0.56	-1.3
2,668,706	-		RALBFv3_RS12090	0.56	+0.1
2,668,706	-		RALBFv3_RS12090	0.56	-0.2