Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS10105 and RALBFv3_RS10110 are separated by 285 nucleotides RALBFv3_RS10110 and RALBFv3_RS10115 are separated by 78 nucleotides RALBFv3_RS10115 and RALBFv3_RS10120 are separated by 98 nucleotides
RALBFv3_RS10105: RALBFv3_RS10105 - membrane protein, at 2,249,070 to 2,249,981
_RS10105
RALBFv3_RS10110: RALBFv3_RS10110 - YdcF family protein, at 2,250,267 to 2,251,022
_RS10110
RALBFv3_RS10115: RALBFv3_RS10115 - hypothetical protein, at 2,251,101 to 2,251,445
_RS10115
RALBFv3_RS10120: RALBFv3_RS10120 - hypothetical protein, at 2,251,544 to 2,252,158
_RS10120
Position (kb)
2250
2251
2252 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 2249.503 kb on + strand, within RALBFv3_RS10105 at 2249.503 kb on + strand, within RALBFv3_RS10105 at 2249.504 kb on - strand, within RALBFv3_RS10105 at 2249.504 kb on - strand, within RALBFv3_RS10105 at 2249.743 kb on + strand, within RALBFv3_RS10105 at 2249.782 kb on + strand, within RALBFv3_RS10105 at 2249.783 kb on - strand, within RALBFv3_RS10105 at 2249.857 kb on + strand, within RALBFv3_RS10105 at 2249.971 kb on + strand at 2250.126 kb on + strand at 2250.127 kb on - strand at 2250.127 kb on - strand at 2250.127 kb on - strand at 2250.138 kb on + strand at 2250.138 kb on + strand at 2250.139 kb on - strand at 2250.188 kb on + strand at 2250.230 kb on - strand at 2250.316 kb on + strand at 2250.325 kb on + strand at 2250.326 kb on - strand at 2250.358 kb on + strand, within RALBFv3_RS10110 at 2250.358 kb on + strand, within RALBFv3_RS10110 at 2250.358 kb on + strand, within RALBFv3_RS10110 at 2250.521 kb on - strand, within RALBFv3_RS10110 at 2250.721 kb on + strand, within RALBFv3_RS10110 at 2250.721 kb on + strand, within RALBFv3_RS10110 at 2250.722 kb on - strand, within RALBFv3_RS10110 at 2251.008 kb on + strand at 2251.589 kb on + strand at 2251.589 kb on + strand at 2251.590 kb on - strand at 2251.808 kb on + strand, within RALBFv3_RS10120 at 2251.809 kb on - strand, within RALBFv3_RS10120 at 2251.809 kb on - strand, within RALBFv3_RS10120 at 2251.809 kb on - strand, within RALBFv3_RS10120 at 2251.809 kb on - strand, within RALBFv3_RS10120 at 2251.896 kb on + strand, within RALBFv3_RS10120 at 2251.896 kb on + strand, within RALBFv3_RS10120
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 2,249,503 + RALBFv3_RS10105 0.47 -1.0 2,249,503 + RALBFv3_RS10105 0.47 +1.2 2,249,504 - RALBFv3_RS10105 0.48 +0.4 2,249,504 - RALBFv3_RS10105 0.48 +0.5 2,249,743 + RALBFv3_RS10105 0.74 +0.8 2,249,782 + RALBFv3_RS10105 0.78 -0.6 2,249,783 - RALBFv3_RS10105 0.78 +5.4 2,249,857 + RALBFv3_RS10105 0.86 +1.2 2,249,971 + +0.2 2,250,126 + +0.4 2,250,127 - -0.7 2,250,127 - -0.9 2,250,127 - -0.6 2,250,138 + +1.1 2,250,138 + +1.2 2,250,139 - -0.2 2,250,188 + +1.1 2,250,230 - -0.3 2,250,316 + +0.4 2,250,325 + -1.3 2,250,326 - -0.2 2,250,358 + RALBFv3_RS10110 0.12 -0.7 2,250,358 + RALBFv3_RS10110 0.12 -0.2 2,250,358 + RALBFv3_RS10110 0.12 -0.7 2,250,521 - RALBFv3_RS10110 0.34 +1.1 2,250,721 + RALBFv3_RS10110 0.60 -0.8 2,250,721 + RALBFv3_RS10110 0.60 +0.0 2,250,722 - RALBFv3_RS10110 0.60 -1.0 2,251,008 + -0.6 2,251,589 + +0.3 2,251,589 + +0.1 2,251,590 - -0.3 2,251,808 + RALBFv3_RS10120 0.43 -0.1 2,251,809 - RALBFv3_RS10120 0.43 -0.5 2,251,809 - RALBFv3_RS10120 0.43 +1.9 2,251,809 - RALBFv3_RS10120 0.43 +1.2 2,251,809 - RALBFv3_RS10120 0.43 -0.3 2,251,896 + RALBFv3_RS10120 0.57 +0.4 2,251,896 + RALBFv3_RS10120 0.57 +2.6
Or see this region's nucleotide sequence