Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS10110

Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS10105 and RALBFv3_RS10110 are separated by 285 nucleotidesRALBFv3_RS10110 and RALBFv3_RS10115 are separated by 78 nucleotidesRALBFv3_RS10115 and RALBFv3_RS10120 are separated by 98 nucleotides RALBFv3_RS10105: RALBFv3_RS10105 - membrane protein, at 2,249,070 to 2,249,981 _RS10105 RALBFv3_RS10110: RALBFv3_RS10110 - YdcF family protein, at 2,250,267 to 2,251,022 _RS10110 RALBFv3_RS10115: RALBFv3_RS10115 - hypothetical protein, at 2,251,101 to 2,251,445 _RS10115 RALBFv3_RS10120: RALBFv3_RS10120 - hypothetical protein, at 2,251,544 to 2,252,158 _RS10120 Position (kb) 2250 2251 2252Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2249.503 kb on + strand, within RALBFv3_RS10105at 2249.503 kb on + strand, within RALBFv3_RS10105at 2249.504 kb on - strand, within RALBFv3_RS10105at 2249.504 kb on - strand, within RALBFv3_RS10105at 2249.743 kb on + strand, within RALBFv3_RS10105at 2249.782 kb on + strand, within RALBFv3_RS10105at 2249.783 kb on - strand, within RALBFv3_RS10105at 2249.857 kb on + strand, within RALBFv3_RS10105at 2249.971 kb on + strandat 2250.126 kb on + strandat 2250.127 kb on - strandat 2250.127 kb on - strandat 2250.127 kb on - strandat 2250.138 kb on + strandat 2250.138 kb on + strandat 2250.139 kb on - strandat 2250.188 kb on + strandat 2250.230 kb on - strandat 2250.316 kb on + strandat 2250.325 kb on + strandat 2250.326 kb on - strandat 2250.358 kb on + strand, within RALBFv3_RS10110at 2250.358 kb on + strand, within RALBFv3_RS10110at 2250.358 kb on + strand, within RALBFv3_RS10110at 2250.521 kb on - strand, within RALBFv3_RS10110at 2250.721 kb on + strand, within RALBFv3_RS10110at 2250.721 kb on + strand, within RALBFv3_RS10110at 2250.722 kb on - strand, within RALBFv3_RS10110at 2251.008 kb on + strandat 2251.589 kb on + strandat 2251.589 kb on + strandat 2251.590 kb on - strandat 2251.808 kb on + strand, within RALBFv3_RS10120at 2251.809 kb on - strand, within RALBFv3_RS10120at 2251.809 kb on - strand, within RALBFv3_RS10120at 2251.809 kb on - strand, within RALBFv3_RS10120at 2251.809 kb on - strand, within RALBFv3_RS10120at 2251.896 kb on + strand, within RALBFv3_RS10120at 2251.896 kb on + strand, within RALBFv3_RS10120

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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2,249,503 + RALBFv3_RS10105 0.47 -1.0
2,249,503 + RALBFv3_RS10105 0.47 +1.2
2,249,504 - RALBFv3_RS10105 0.48 +0.4
2,249,504 - RALBFv3_RS10105 0.48 +0.5
2,249,743 + RALBFv3_RS10105 0.74 +0.8
2,249,782 + RALBFv3_RS10105 0.78 -0.6
2,249,783 - RALBFv3_RS10105 0.78 +5.4
2,249,857 + RALBFv3_RS10105 0.86 +1.2
2,249,971 + +0.2
2,250,126 + +0.4
2,250,127 - -0.7
2,250,127 - -0.9
2,250,127 - -0.6
2,250,138 + +1.1
2,250,138 + +1.2
2,250,139 - -0.2
2,250,188 + +1.1
2,250,230 - -0.3
2,250,316 + +0.4
2,250,325 + -1.3
2,250,326 - -0.2
2,250,358 + RALBFv3_RS10110 0.12 -0.7
2,250,358 + RALBFv3_RS10110 0.12 -0.2
2,250,358 + RALBFv3_RS10110 0.12 -0.7
2,250,521 - RALBFv3_RS10110 0.34 +1.1
2,250,721 + RALBFv3_RS10110 0.60 -0.8
2,250,721 + RALBFv3_RS10110 0.60 +0.0
2,250,722 - RALBFv3_RS10110 0.60 -1.0
2,251,008 + -0.6
2,251,589 + +0.3
2,251,589 + +0.1
2,251,590 - -0.3
2,251,808 + RALBFv3_RS10120 0.43 -0.1
2,251,809 - RALBFv3_RS10120 0.43 -0.5
2,251,809 - RALBFv3_RS10120 0.43 +1.9
2,251,809 - RALBFv3_RS10120 0.43 +1.2
2,251,809 - RALBFv3_RS10120 0.43 -0.3
2,251,896 + RALBFv3_RS10120 0.57 +0.4
2,251,896 + RALBFv3_RS10120 0.57 +2.6

Or see this region's nucleotide sequence