Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS07940

Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
1,749,678	+				+0.2
1,749,678	+				+0.2
1,749,679	-				+1.3
1,749,685	-				+0.3
1,749,716	-		RALBFv3_RS23760	0.14	+0.1
1,749,738	+		RALBFv3_RS23760	0.19	+1.3
1,749,738	+		RALBFv3_RS23760	0.19	-0.3
1,749,738	+		RALBFv3_RS23760	0.19	+3.7
1,749,739	-		RALBFv3_RS23760	0.19	+1.4
1,749,739	-		RALBFv3_RS23760	0.19	-0.8
1,749,906	+		RALBFv3_RS23760	0.57	+0.7
1,749,906	+		RALBFv3_RS23760	0.57	-0.2
1,749,907	-		RALBFv3_RS23760	0.57	-0.1
1,750,063	-				-1.8
1,750,071	+				+0.4
1,750,071	+				+0.8
1,750,077	+				-0.8
1,750,077	+				-0.6
1,750,105	-				+1.8
1,750,263	+				-0.5
1,750,263	+				+0.9
1,750,263	+				-0.6
1,750,263	+				-0.0
1,750,263	+				-1.4
1,750,263	+				+0.4
1,750,263	+				+0.2
1,750,263	+				+0.3
1,750,264	-				-0.9
1,750,264	-				-0.8
1,750,264	-				-1.4
1,750,264	-				-0.6
1,750,264	-				-0.7
1,750,264	-				-0.8
1,750,500	+				-1.6
1,750,500	+				-0.5
1,750,500	+				-0.0
1,750,500	+				-1.1
1,750,500	+				-0.9
1,750,500	+				+2.7
1,750,501	-				-1.5
1,750,501	-				-0.6
1,750,501	-				-1.7
1,750,501	-				+0.3
1,750,501	-				-1.1
1,750,501	-				-1.4
1,750,501	-				-0.2
1,750,502	+				+0.9
1,750,502	+				-0.1
1,750,502	+				+2.3
1,750,502	+				+2.2
1,750,502	+				-0.5
1,750,502	+				-0.8
1,750,502	+				+3.2
1,750,503	-				-0.3
1,750,503	-				-0.1
1,750,503	-				+1.2
1,750,503	-				-0.3
1,750,503	-				-2.0
1,750,579	+				+1.3
1,750,627	+				-0.7
1,750,627	+				-0.5
1,750,627	+				-1.1
1,750,628	-				-0.4
1,750,628	-				-0.6
1,750,628	-				-0.9
1,750,628	-				-1.7
1,750,628	-				-1.2
1,750,628	-				+0.3
1,750,628	-				-0.2
1,750,630	+				+2.5
1,750,630	+				-0.0
1,750,630	+				+1.6
1,750,631	-				-0.5
1,750,631	-				+0.0
1,750,724	+				+2.0
1,750,724	+				-0.8
1,750,724	+				+2.4
1,750,725	-				-0.6
1,750,725	-				+0.9
1,750,725	-				-1.3
1,750,805	+				+0.2
1,750,805	+				-0.2
1,750,805	+				+2.4
1,750,805	+				-0.5
1,750,805	+				-1.2
1,750,805	+				-0.1
1,750,805	+				+1.6
1,750,806	-				+0.2
1,750,806	-				-0.3
1,750,806	-				+1.1
1,750,853	+		RALBFv3_RS07940	0.11	-0.2
1,750,853	+		RALBFv3_RS07940	0.11	+0.8
1,750,854	-		RALBFv3_RS07940	0.11	+1.2
1,750,854	-		RALBFv3_RS07940	0.11	-0.2
1,750,910	+		RALBFv3_RS07940	0.13	+2.2
1,751,033	+		RALBFv3_RS07940	0.19	+0.7
1,751,033	+		RALBFv3_RS07940	0.19	-0.4
1,751,033	+		RALBFv3_RS07940	0.19	-2.5
1,751,033	+		RALBFv3_RS07940	0.19	+0.2
1,751,034	-		RALBFv3_RS07940	0.19	+0.7
1,751,034	-		RALBFv3_RS07940	0.19	-0.5
1,751,034	-		RALBFv3_RS07940	0.19	-1.3
1,751,034	-		RALBFv3_RS07940	0.19	+0.0
1,751,034	-		RALBFv3_RS07940	0.19	-1.6
1,751,084	+		RALBFv3_RS07940	0.21	+0.8
1,751,084	+		RALBFv3_RS07940	0.21	-0.3
1,751,085	-		RALBFv3_RS07940	0.21	-0.3
1,751,085	-		RALBFv3_RS07940	0.21	-2.1
1,751,085	-		RALBFv3_RS07940	0.21	+0.6
1,751,100	-		RALBFv3_RS07940	0.22	+0.2
1,751,101	-		RALBFv3_RS07940	0.22	+1.2
1,751,157	+		RALBFv3_RS07940	0.25	-0.2
1,751,387	+		RALBFv3_RS07940	0.36	-0.6
1,751,387	+		RALBFv3_RS07940	0.36	+0.2
1,751,387	+		RALBFv3_RS07940	0.36	+1.0
1,751,388	-		RALBFv3_RS07940	0.36	+0.7
1,751,534	+		RALBFv3_RS07940	0.42	-0.1
1,751,534	+		RALBFv3_RS07940	0.42	+0.5
1,751,534	+		RALBFv3_RS07940	0.42	+0.2
1,751,534	+		RALBFv3_RS07940	0.42	+0.2
1,751,535	-		RALBFv3_RS07940	0.42	-0.1
1,751,535	-		RALBFv3_RS07940	0.42	+0.0
1,751,535	-		RALBFv3_RS07940	0.42	+1.2
1,751,535	-		RALBFv3_RS07940	0.42	-0.6
1,751,535	-		RALBFv3_RS07940	0.42	-0.0
1,751,535	-		RALBFv3_RS07940	0.42	+4.0
1,751,535	-		RALBFv3_RS07940	0.42	-1.3
1,751,537	+		RALBFv3_RS07940	0.42	-0.2
1,751,537	+		RALBFv3_RS07940	0.42	-0.3
1,751,537	+		RALBFv3_RS07940	0.42	+0.8
1,751,537	+		RALBFv3_RS07940	0.42	-0.2
1,751,537	+		RALBFv3_RS07940	0.42	-2.2
1,751,538	-		RALBFv3_RS07940	0.43	-0.3
1,751,538	-		RALBFv3_RS07940	0.43	-0.2
1,751,538	-		RALBFv3_RS07940	0.43	+0.1
1,751,637	-		RALBFv3_RS07940	0.47	-1.1
1,751,637	-		RALBFv3_RS07940	0.47	-0.8
1,751,648	+		RALBFv3_RS07940	0.48	-0.8
1,751,649	-		RALBFv3_RS07940	0.48	-1.0
1,751,649	-		RALBFv3_RS07940	0.48	-0.9
1,751,649	-		RALBFv3_RS07940	0.48	+0.6
1,751,693	+		RALBFv3_RS07940	0.50	+3.4
1,751,693	+		RALBFv3_RS07940	0.50	+1.2
1,751,693	+		RALBFv3_RS07940	0.50	-0.2
1,751,693	+		RALBFv3_RS07940	0.50	-0.5
1,751,693	+		RALBFv3_RS07940	0.50	-0.0
1,751,693	+		RALBFv3_RS07940	0.50	-0.6
1,751,693	+		RALBFv3_RS07940	0.50	-0.6
1,751,694	-		RALBFv3_RS07940	0.50	+0.5
1,751,694	-		RALBFv3_RS07940	0.50	-0.8
1,751,780	-		RALBFv3_RS07940	0.54	+1.2
1,751,804	+		RALBFv3_RS07940	0.55	-0.5
1,751,804	+		RALBFv3_RS07940	0.55	-0.1
1,751,804	+		RALBFv3_RS07940	0.55	-0.1
1,751,805	-		RALBFv3_RS07940	0.55	+1.2
1,751,805	-		RALBFv3_RS07940	0.55	+0.2
1,751,805	-		RALBFv3_RS07940	0.55	-0.3
1,751,837	+		RALBFv3_RS07940	0.56	-0.6
1,751,837	+		RALBFv3_RS07940	0.56	+1.1
1,751,837	+		RALBFv3_RS07940	0.56	+0.2
1,751,837	+		RALBFv3_RS07940	0.56	+0.9
1,751,838	-		RALBFv3_RS07940	0.56	-1.9
1,751,838	-		RALBFv3_RS07940	0.56	-0.6
1,751,843	+		RALBFv3_RS07940	0.57	-0.6
1,751,843	+		RALBFv3_RS07940	0.57	+1.0
1,751,843	+		RALBFv3_RS07940	0.57	-0.6
1,751,844	-		RALBFv3_RS07940	0.57	-0.6
1,751,844	-		RALBFv3_RS07940	0.57	-1.0
1,751,844	-		RALBFv3_RS07940	0.57	+0.7
1,751,844	-		RALBFv3_RS07940	0.57	+0.8
1,751,917	+		RALBFv3_RS07940	0.60	+0.5
1,751,918	-		RALBFv3_RS07940	0.60	-0.3
1,751,998	+		RALBFv3_RS07940	0.64	-0.2
1,751,998	+		RALBFv3_RS07940	0.64	-0.1
1,751,999	-		RALBFv3_RS07940	0.64	+1.0
1,751,999	-		RALBFv3_RS07940	0.64	+0.9
1,751,999	-		RALBFv3_RS07940	0.64	-0.8
1,751,999	-		RALBFv3_RS07940	0.64	-0.1
1,751,999	-		RALBFv3_RS07940	0.64	-1.5
1,751,999	-		RALBFv3_RS07940	0.64	-0.6
1,752,150	+		RALBFv3_RS07940	0.71	-1.0
1,752,176	+		RALBFv3_RS07940	0.72	-1.1
1,752,176	+		RALBFv3_RS07940	0.72	+1.2
1,752,176	+		RALBFv3_RS07940	0.72	+1.0
1,752,176	+		RALBFv3_RS07940	0.72	+0.2
1,752,176	+		RALBFv3_RS07940	0.72	-0.3
1,752,176	+		RALBFv3_RS07940	0.72	-0.6
1,752,176	+		RALBFv3_RS07940	0.72	+0.4
1,752,176	+		RALBFv3_RS07940	0.72	-1.8
1,752,177	-		RALBFv3_RS07940	0.72	-0.2
1,752,177	-		RALBFv3_RS07940	0.72	-0.3
1,752,177	-		RALBFv3_RS07940	0.72	-0.0
1,752,177	-		RALBFv3_RS07940	0.72	-0.7
1,752,177	-		RALBFv3_RS07940	0.72	+0.5
1,752,177	-		RALBFv3_RS07940	0.72	+1.6
1,752,177	-		RALBFv3_RS07940	0.72	-0.5
1,752,177	-		RALBFv3_RS07940	0.72	-1.8
1,752,177	-		RALBFv3_RS07940	0.72	-1.1
1,752,251	+		RALBFv3_RS07940	0.76	-0.5
1,752,251	+		RALBFv3_RS07940	0.76	-0.1
1,752,251	+		RALBFv3_RS07940	0.76	+0.4
1,752,251	+		RALBFv3_RS07940	0.76	-0.5
1,752,251	+		RALBFv3_RS07940	0.76	+0.3
1,752,252	-		RALBFv3_RS07940	0.76	+1.8
1,752,252	-		RALBFv3_RS07940	0.76	+0.2
1,752,252	-		RALBFv3_RS07940	0.76	-0.1
1,752,252	-		RALBFv3_RS07940	0.76	-0.5
1,752,253	+		RALBFv3_RS07940	0.76	-0.0
1,752,253	+		RALBFv3_RS07940	0.76	-1.2
1,752,253	+		RALBFv3_RS07940	0.76	-0.8
1,752,253	+		RALBFv3_RS07940	0.76	+0.4
1,752,253	+		RALBFv3_RS07940	0.76	-0.3
1,752,253	+		RALBFv3_RS07940	0.76	+1.2
1,752,253	+		RALBFv3_RS07940	0.76	-1.4
1,752,254	-		RALBFv3_RS07940	0.76	+0.0
1,752,254	-		RALBFv3_RS07940	0.76	-0.3
1,752,254	-		RALBFv3_RS07940	0.76	+1.3
1,752,254	-		RALBFv3_RS07940	0.76	+0.0
1,752,254	-		RALBFv3_RS07940	0.76	-0.7
1,752,254	-		RALBFv3_RS07940	0.76	-0.9
1,752,254	-		RALBFv3_RS07940	0.76	+1.7
1,752,254	-		RALBFv3_RS07940	0.76	+0.8
1,752,254	-		RALBFv3_RS07940	0.76	-0.8
1,752,254	-		RALBFv3_RS07940	0.76	+4.4
1,752,254	-		RALBFv3_RS07940	0.76	-1.0
1,752,254	-		RALBFv3_RS07940	0.76	+0.7
1,752,254	-		RALBFv3_RS07940	0.76	-0.4
1,752,300	-		RALBFv3_RS07940	0.78	-0.3
1,752,478	+		RALBFv3_RS07940	0.86	+2.6
1,752,478	+		RALBFv3_RS07940	0.86	+1.0
1,752,479	-		RALBFv3_RS07940	0.86	-2.1
1,752,607	+				+0.4
1,752,608	-				+0.2
1,752,611	+				+0.1
1,752,611	+				+0.8
1,752,611	+				-0.1
1,752,611	+				+1.5
1,752,611	+				+0.2
1,752,611	+				-0.9
1,752,611	+				+0.9
1,752,611	+				+0.1
1,752,611	+				+1.3
1,752,611	+				+1.1
1,752,611	+				+1.2
1,752,611	+				-0.1
1,752,611	+				-0.0
1,752,612	-				+1.8
1,752,612	-				-1.6
1,752,612	-				-0.0
1,752,612	-				-0.8
1,752,612	-				+0.9
1,752,612	-				+0.2
1,752,700	+				-1.1
1,752,756	+				-0.9
1,752,756	+				+0.3
1,752,757	-				+1.2
1,752,810	+				-0.6
1,752,811	-				-0.3
1,752,882	+				-0.9
1,752,882	+				+2.2
1,752,883	-				+0.2
1,753,036	+		RALBFv3_RS07945	0.56	+1.2
1,753,037	-		RALBFv3_RS07945	0.56	+1.2
1,753,037	-		RALBFv3_RS07945	0.56	-2.0
1,753,037	-		RALBFv3_RS07945	0.56	+1.0
1,753,160	+				-0.2
1,753,208	+				-1.2
1,753,208	+				+0.2
1,753,209	-				+0.3
1,753,209	-				+1.8
1,753,209	-				+2.3
1,753,209	-				+0.8
1,753,209	-				-0.3
1,753,351	-				+0.4
1,753,375	+				-1.0
1,753,376	-				-1.6
1,753,543	+				+0.9
1,753,544	-				+0.3