Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS07520

Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS07515 and RALBFv3_RS07520 are separated by 192 nucleotidesRALBFv3_RS07520 and RALBFv3_RS07525 are separated by 14 nucleotides RALBFv3_RS07515: RALBFv3_RS07515 - cation transporter, at 1,652,054 to 1,653,214 _RS07515 RALBFv3_RS07520: RALBFv3_RS07520 - DNA-binding response regulator, at 1,653,407 to 1,654,075 _RS07520 RALBFv3_RS07525: RALBFv3_RS07525 - hybrid sensor histidine kinase/response regulator, at 1,654,090 to 1,657,089 _RS07525 Position (kb) 1653 1654 1655Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1652.784 kb on + strand, within RALBFv3_RS07515at 1652.784 kb on + strand, within RALBFv3_RS07515at 1652.784 kb on + strand, within RALBFv3_RS07515at 1652.785 kb on - strand, within RALBFv3_RS07515at 1652.785 kb on - strand, within RALBFv3_RS07515at 1652.956 kb on - strand, within RALBFv3_RS07515at 1653.285 kb on + strandat 1653.285 kb on + strandat 1653.286 kb on - strandat 1653.286 kb on - strandat 1653.465 kb on + strandat 1653.562 kb on + strand, within RALBFv3_RS07520at 1653.563 kb on + strand, within RALBFv3_RS07520at 1653.578 kb on + strand, within RALBFv3_RS07520at 1653.755 kb on - strand, within RALBFv3_RS07520at 1653.755 kb on - strand, within RALBFv3_RS07520at 1653.794 kb on + strand, within RALBFv3_RS07520at 1653.908 kb on + strand, within RALBFv3_RS07520at 1653.908 kb on + strand, within RALBFv3_RS07520at 1653.908 kb on + strand, within RALBFv3_RS07520at 1653.909 kb on - strand, within RALBFv3_RS07520at 1653.909 kb on - strand, within RALBFv3_RS07520at 1653.909 kb on - strand, within RALBFv3_RS07520at 1653.909 kb on - strand, within RALBFv3_RS07520at 1654.196 kb on - strandat 1654.196 kb on - strandat 1654.196 kb on - strandat 1654.196 kb on - strandat 1654.465 kb on + strand, within RALBFv3_RS07525at 1654.466 kb on - strand, within RALBFv3_RS07525at 1654.466 kb on - strand, within RALBFv3_RS07525at 1654.466 kb on - strand, within RALBFv3_RS07525at 1654.879 kb on + strand, within RALBFv3_RS07525at 1654.879 kb on + strand, within RALBFv3_RS07525at 1654.879 kb on + strand, within RALBFv3_RS07525at 1654.879 kb on + strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,652,784 + RALBFv3_RS07515 0.63 -2.5
1,652,784 + RALBFv3_RS07515 0.63 -2.5
1,652,784 + RALBFv3_RS07515 0.63 -0.6
1,652,785 - RALBFv3_RS07515 0.63 +0.6
1,652,785 - RALBFv3_RS07515 0.63 -0.0
1,652,956 - RALBFv3_RS07515 0.78 -0.1
1,653,285 + -0.7
1,653,285 + -0.3
1,653,286 - -0.5
1,653,286 - +0.0
1,653,465 + +4.3
1,653,562 + RALBFv3_RS07520 0.23 -0.3
1,653,563 + RALBFv3_RS07520 0.23 -0.5
1,653,578 + RALBFv3_RS07520 0.26 -0.6
1,653,755 - RALBFv3_RS07520 0.52 -1.0
1,653,755 - RALBFv3_RS07520 0.52 -1.3
1,653,794 + RALBFv3_RS07520 0.58 +0.3
1,653,908 + RALBFv3_RS07520 0.75 +1.7
1,653,908 + RALBFv3_RS07520 0.75 +0.3
1,653,908 + RALBFv3_RS07520 0.75 +0.5
1,653,909 - RALBFv3_RS07520 0.75 -0.2
1,653,909 - RALBFv3_RS07520 0.75 -0.5
1,653,909 - RALBFv3_RS07520 0.75 -0.2
1,653,909 - RALBFv3_RS07520 0.75 -0.4
1,654,196 - -0.2
1,654,196 - -0.3
1,654,196 - -0.3
1,654,196 - +0.6
1,654,465 + RALBFv3_RS07525 0.12 +1.3
1,654,466 - RALBFv3_RS07525 0.13 +1.3
1,654,466 - RALBFv3_RS07525 0.13 +0.1
1,654,466 - RALBFv3_RS07525 0.13 +0.3
1,654,879 + RALBFv3_RS07525 0.26 -2.6
1,654,879 + RALBFv3_RS07525 0.26 -0.5
1,654,879 + RALBFv3_RS07525 0.26 -0.3
1,654,879 + RALBFv3_RS07525 0.26 -0.7
1,654,880 - RALBFv3_RS07525 0.26 +0.3
1,654,880 - RALBFv3_RS07525 0.26 -1.3
1,654,880 - RALBFv3_RS07525 0.26 -0.6
1,654,880 - RALBFv3_RS07525 0.26 -0.3
1,654,880 - RALBFv3_RS07525 0.26 -0.5
1,654,880 - RALBFv3_RS07525 0.26 -0.5
1,654,880 - RALBFv3_RS07525 0.26 -0.3
1,654,880 - RALBFv3_RS07525 0.26 -0.6

Or see this region's nucleotide sequence