Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS03470

Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS03460 and RALBFv3_RS03465 are separated by 55 nucleotidesRALBFv3_RS03465 and RALBFv3_RS03470 overlap by 4 nucleotidesRALBFv3_RS03470 and RALBFv3_RS03475 overlap by 1 nucleotides RALBFv3_RS03460: RALBFv3_RS03460 - BMP family ABC transporter substrate-binding protein, at 763,062 to 764,216 _RS03460 RALBFv3_RS03465: RALBFv3_RS03465 - DUF4019 domain-containing protein, at 764,272 to 764,832 _RS03465 RALBFv3_RS03470: RALBFv3_RS03470 - hypothetical protein, at 764,829 to 765,350 _RS03470 RALBFv3_RS03475: RALBFv3_RS03475 - hypothetical protein, at 765,350 to 766,459 _RS03475 Position (kb) 764 765 766Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 763.833 kb on + strand, within RALBFv3_RS03460at 763.834 kb on - strand, within RALBFv3_RS03460at 763.914 kb on + strand, within RALBFv3_RS03460at 763.914 kb on + strand, within RALBFv3_RS03460at 763.914 kb on + strand, within RALBFv3_RS03460at 763.915 kb on - strand, within RALBFv3_RS03460at 763.917 kb on + strand, within RALBFv3_RS03460at 763.917 kb on + strand, within RALBFv3_RS03460at 763.918 kb on - strand, within RALBFv3_RS03460at 763.918 kb on - strand, within RALBFv3_RS03460at 763.918 kb on - strand, within RALBFv3_RS03460at 763.918 kb on - strand, within RALBFv3_RS03460at 764.276 kb on + strandat 764.277 kb on - strandat 764.282 kb on + strandat 764.283 kb on - strandat 764.283 kb on - strandat 764.303 kb on + strandat 764.303 kb on + strandat 764.303 kb on + strandat 764.304 kb on - strandat 764.304 kb on - strandat 764.307 kb on - strandat 764.307 kb on - strandat 764.307 kb on - strandat 764.373 kb on - strand, within RALBFv3_RS03465at 764.373 kb on - strand, within RALBFv3_RS03465at 764.423 kb on + strand, within RALBFv3_RS03465at 764.424 kb on - strand, within RALBFv3_RS03465at 764.553 kb on - strand, within RALBFv3_RS03465at 764.585 kb on + strand, within RALBFv3_RS03465at 764.600 kb on + strand, within RALBFv3_RS03465at 764.601 kb on - strand, within RALBFv3_RS03465at 765.095 kb on - strand, within RALBFv3_RS03470at 765.095 kb on - strand, within RALBFv3_RS03470at 765.565 kb on - strand, within RALBFv3_RS03475at 765.712 kb on + strand, within RALBFv3_RS03475at 765.713 kb on - strand, within RALBFv3_RS03475at 765.713 kb on - strand, within RALBFv3_RS03475at 765.713 kb on - strand, within RALBFv3_RS03475at 765.813 kb on + strand, within RALBFv3_RS03475at 765.813 kb on + strand, within RALBFv3_RS03475at 765.813 kb on + strand, within RALBFv3_RS03475at 765.813 kb on + strand, within RALBFv3_RS03475at 765.813 kb on + strand, within RALBFv3_RS03475at 765.813 kb on + strand, within RALBFv3_RS03475at 765.814 kb on - strand, within RALBFv3_RS03475at 765.814 kb on - strand, within RALBFv3_RS03475at 765.891 kb on + strand, within RALBFv3_RS03475at 765.891 kb on + strand, within RALBFv3_RS03475at 766.083 kb on + strand, within RALBFv3_RS03475at 766.083 kb on + strand, within RALBFv3_RS03475at 766.197 kb on + strand, within RALBFv3_RS03475at 766.197 kb on + strand, within RALBFv3_RS03475

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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763,833 + RALBFv3_RS03460 0.67 -0.3
763,834 - RALBFv3_RS03460 0.67 -1.1
763,914 + RALBFv3_RS03460 0.74 +0.9
763,914 + RALBFv3_RS03460 0.74 -1.5
763,914 + RALBFv3_RS03460 0.74 -1.5
763,915 - RALBFv3_RS03460 0.74 -1.0
763,917 + RALBFv3_RS03460 0.74 +0.2
763,917 + RALBFv3_RS03460 0.74 +0.4
763,918 - RALBFv3_RS03460 0.74 -0.9
763,918 - RALBFv3_RS03460 0.74 -0.1
763,918 - RALBFv3_RS03460 0.74 +1.9
763,918 - RALBFv3_RS03460 0.74 +0.3
764,276 + -0.4
764,277 - +0.0
764,282 + +0.6
764,283 - +1.9
764,283 - -1.2
764,303 + -0.1
764,303 + +0.9
764,303 + -0.2
764,304 - -0.1
764,304 - +0.2
764,307 - -1.1
764,307 - -2.2
764,307 - -0.4
764,373 - RALBFv3_RS03465 0.18 -0.6
764,373 - RALBFv3_RS03465 0.18 -1.1
764,423 + RALBFv3_RS03465 0.27 -1.2
764,424 - RALBFv3_RS03465 0.27 +0.1
764,553 - RALBFv3_RS03465 0.50 +1.5
764,585 + RALBFv3_RS03465 0.56 -0.4
764,600 + RALBFv3_RS03465 0.58 -0.6
764,601 - RALBFv3_RS03465 0.59 +0.4
765,095 - RALBFv3_RS03470 0.51 -1.1
765,095 - RALBFv3_RS03470 0.51 -2.0
765,565 - RALBFv3_RS03475 0.19 +1.5
765,712 + RALBFv3_RS03475 0.33 -0.1
765,713 - RALBFv3_RS03475 0.33 -1.5
765,713 - RALBFv3_RS03475 0.33 -0.7
765,713 - RALBFv3_RS03475 0.33 +0.4
765,813 + RALBFv3_RS03475 0.42 +1.4
765,813 + RALBFv3_RS03475 0.42 -1.6
765,813 + RALBFv3_RS03475 0.42 -2.0
765,813 + RALBFv3_RS03475 0.42 +1.0
765,813 + RALBFv3_RS03475 0.42 +0.1
765,813 + RALBFv3_RS03475 0.42 -1.3
765,814 - RALBFv3_RS03475 0.42 -0.9
765,814 - RALBFv3_RS03475 0.42 -0.1
765,891 + RALBFv3_RS03475 0.49 -2.5
765,891 + RALBFv3_RS03475 0.49 -1.1
766,083 + RALBFv3_RS03475 0.66 -0.9
766,083 + RALBFv3_RS03475 0.66 +0.5
766,197 + RALBFv3_RS03475 0.76 +4.0
766,197 + RALBFv3_RS03475 0.76 +0.8

Or see this region's nucleotide sequence