Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01480 and RALBFv3_RS01485 are separated by 76 nucleotides RALBFv3_RS01485 and RALBFv3_RS01490 are separated by 230 nucleotides
RALBFv3_RS01480: RALBFv3_RS01480 - 30S ribosomal protein S12 methylthiotransferase RimO, at 333,286 to 334,665
_RS01480
RALBFv3_RS01485: RALBFv3_RS01485 - dihydrouridine synthase, at 334,742 to 335,722
_RS01485
RALBFv3_RS01490: RALBFv3_RS01490 - polyhydroxyalkanoate synthesis repressor PhaR, at 335,953 to 336,510
_RS01490
Position (kb) 334
335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 333.845 kb on + strand, within RALBFv3_RS01480 at 333.846 kb on - strand, within RALBFv3_RS01480 at 333.905 kb on + strand, within RALBFv3_RS01480 at 333.911 kb on + strand, within RALBFv3_RS01480 at 333.911 kb on + strand, within RALBFv3_RS01480 at 333.912 kb on - strand, within RALBFv3_RS01480 at 334.037 kb on + strand, within RALBFv3_RS01480 at 334.288 kb on - strand, within RALBFv3_RS01480 at 334.520 kb on + strand, within RALBFv3_RS01480 at 334.520 kb on + strand, within RALBFv3_RS01480 at 334.520 kb on + strand, within RALBFv3_RS01480 at 334.520 kb on + strand, within RALBFv3_RS01480 at 334.606 kb on + strand at 334.728 kb on - strand at 334.730 kb on + strand at 334.875 kb on + strand, within RALBFv3_RS01485 at 335.584 kb on - strand, within RALBFv3_RS01485 at 336.066 kb on - strand, within RALBFv3_RS01490 at 336.218 kb on + strand, within RALBFv3_RS01490 at 336.218 kb on + strand, within RALBFv3_RS01490 at 336.219 kb on - strand, within RALBFv3_RS01490 at 336.252 kb on - strand, within RALBFv3_RS01490 at 336.252 kb on - strand, within RALBFv3_RS01490 at 336.429 kb on - strand, within RALBFv3_RS01490 at 336.449 kb on + strand, within RALBFv3_RS01490
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 333,845 + RALBFv3_RS01480 0.41 +0.9 333,846 - RALBFv3_RS01480 0.41 -0.1 333,905 + RALBFv3_RS01480 0.45 +1.1 333,911 + RALBFv3_RS01480 0.45 +0.4 333,911 + RALBFv3_RS01480 0.45 -2.5 333,912 - RALBFv3_RS01480 0.45 -0.4 334,037 + RALBFv3_RS01480 0.54 +0.3 334,288 - RALBFv3_RS01480 0.73 -2.8 334,520 + RALBFv3_RS01480 0.89 -0.1 334,520 + RALBFv3_RS01480 0.89 -0.8 334,520 + RALBFv3_RS01480 0.89 -0.4 334,520 + RALBFv3_RS01480 0.89 +1.1 334,606 + -1.2 334,728 - +0.3 334,730 + +0.5 334,875 + RALBFv3_RS01485 0.14 -0.3 335,584 - RALBFv3_RS01485 0.86 +2.4 336,066 - RALBFv3_RS01490 0.20 -2.5 336,218 + RALBFv3_RS01490 0.47 -3.2 336,218 + RALBFv3_RS01490 0.47 +0.3 336,219 - RALBFv3_RS01490 0.48 -3.1 336,252 - RALBFv3_RS01490 0.54 -2.0 336,252 - RALBFv3_RS01490 0.54 -0.1 336,429 - RALBFv3_RS01490 0.85 -1.9 336,449 + RALBFv3_RS01490 0.89 -2.8
Or see this region's nucleotide sequence