Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32200 and AZOBR_RS32205 are separated by 125 nucleotides AZOBR_RS32205 and AZOBR_RS32210 overlap by 4 nucleotides AZOBR_RS32210 and AZOBR_RS32215 are separated by 304 nucleotides AZOBR_RS32215 and AZOBR_RS32220 are separated by 22 nucleotides
AZOBR_RS32200: AZOBR_RS32200 - glycerol-3-phosphate dehydrogenase subunit C, at 590,221 to 590,493
_RS32200
AZOBR_RS32205: AZOBR_RS32205 - hypothetical protein, at 590,619 to 590,852
_RS32205
AZOBR_RS32210: AZOBR_RS32210 - hypothetical protein, at 590,849 to 591,100
_RS32210
AZOBR_RS32215: AZOBR_RS32215 - hypothetical protein, at 591,405 to 591,755
_RS32215
AZOBR_RS32220: AZOBR_RS32220 - hypothetical protein, at 591,778 to 592,857
_RS32220
Position (kb) 591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 590.491 kb on + strand at 590.491 kb on + strand at 590.492 kb on - strand at 590.566 kb on - strand at 590.566 kb on - strand at 590.715 kb on + strand, within AZOBR_RS32205 at 590.715 kb on + strand, within AZOBR_RS32205 at 590.715 kb on + strand, within AZOBR_RS32205 at 590.715 kb on + strand, within AZOBR_RS32205 at 590.715 kb on + strand, within AZOBR_RS32205 at 590.715 kb on + strand, within AZOBR_RS32205 at 590.716 kb on - strand, within AZOBR_RS32205 at 590.716 kb on - strand, within AZOBR_RS32205 at 590.716 kb on - strand, within AZOBR_RS32205 at 591.449 kb on - strand, within AZOBR_RS32215 at 591.449 kb on - strand, within AZOBR_RS32215 at 591.489 kb on - strand, within AZOBR_RS32215 at 591.513 kb on + strand, within AZOBR_RS32215 at 591.513 kb on + strand, within AZOBR_RS32215 at 591.513 kb on + strand, within AZOBR_RS32215 at 591.514 kb on - strand, within AZOBR_RS32215 at 591.514 kb on - strand, within AZOBR_RS32215 at 591.645 kb on + strand, within AZOBR_RS32215 at 591.645 kb on + strand, within AZOBR_RS32215 at 591.645 kb on + strand, within AZOBR_RS32215 at 591.646 kb on - strand, within AZOBR_RS32215 at 591.646 kb on - strand, within AZOBR_RS32215 at 591.646 kb on - strand, within AZOBR_RS32215 at 591.646 kb on - strand, within AZOBR_RS32215 at 591.646 kb on - strand, within AZOBR_RS32215 at 591.737 kb on + strand at 591.737 kb on + strand at 591.737 kb on + strand at 591.910 kb on + strand, within AZOBR_RS32220 at 591.911 kb on - strand, within AZOBR_RS32220 at 591.911 kb on - strand, within AZOBR_RS32220 at 592.247 kb on - strand, within AZOBR_RS32220 at 592.247 kb on - strand, within AZOBR_RS32220 at 592.345 kb on + strand, within AZOBR_RS32220 at 592.345 kb on + strand, within AZOBR_RS32220 at 592.346 kb on - strand, within AZOBR_RS32220 at 592.346 kb on - strand, within AZOBR_RS32220 at 592.348 kb on + strand, within AZOBR_RS32220 at 592.358 kb on - strand, within AZOBR_RS32220 at 592.366 kb on + strand, within AZOBR_RS32220 at 592.367 kb on - strand, within AZOBR_RS32220
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 590,491 + -0.8 590,491 + -0.9 590,492 - -1.2 590,566 - +1.5 590,566 - +0.7 590,715 + AZOBR_RS32205 0.41 +0.6 590,715 + AZOBR_RS32205 0.41 -0.1 590,715 + AZOBR_RS32205 0.41 -0.6 590,715 + AZOBR_RS32205 0.41 -2.7 590,715 + AZOBR_RS32205 0.41 -0.7 590,715 + AZOBR_RS32205 0.41 -3.3 590,716 - AZOBR_RS32205 0.41 -1.9 590,716 - AZOBR_RS32205 0.41 +1.3 590,716 - AZOBR_RS32205 0.41 +0.8 591,449 - AZOBR_RS32215 0.13 -0.1 591,449 - AZOBR_RS32215 0.13 +0.5 591,489 - AZOBR_RS32215 0.24 +0.5 591,513 + AZOBR_RS32215 0.31 -0.5 591,513 + AZOBR_RS32215 0.31 -0.5 591,513 + AZOBR_RS32215 0.31 -0.1 591,514 - AZOBR_RS32215 0.31 +0.3 591,514 - AZOBR_RS32215 0.31 -0.8 591,645 + AZOBR_RS32215 0.68 -2.7 591,645 + AZOBR_RS32215 0.68 -2.2 591,645 + AZOBR_RS32215 0.68 +0.9 591,646 - AZOBR_RS32215 0.69 +0.2 591,646 - AZOBR_RS32215 0.69 -1.4 591,646 - AZOBR_RS32215 0.69 +0.4 591,646 - AZOBR_RS32215 0.69 -0.3 591,646 - AZOBR_RS32215 0.69 +1.0 591,737 + +0.7 591,737 + +0.9 591,737 + +0.8 591,910 + AZOBR_RS32220 0.12 +0.7 591,911 - AZOBR_RS32220 0.12 -2.1 591,911 - AZOBR_RS32220 0.12 +0.2 592,247 - AZOBR_RS32220 0.43 +1.2 592,247 - AZOBR_RS32220 0.43 -1.7 592,345 + AZOBR_RS32220 0.53 +1.1 592,345 + AZOBR_RS32220 0.53 -0.9 592,346 - AZOBR_RS32220 0.53 +0.7 592,346 - AZOBR_RS32220 0.53 -0.9 592,348 + AZOBR_RS32220 0.53 +1.5 592,358 - AZOBR_RS32220 0.54 -1.7 592,366 + AZOBR_RS32220 0.54 +0.2 592,367 - AZOBR_RS32220 0.55 -2.8
Or see this region's nucleotide sequence