Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30840

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30835 and AZOBR_RS30840 are separated by 25 nucleotides AZOBR_RS30835: AZOBR_RS30835 - PTS fructose transporter subunit IIBC, at 282,037 to 283,791 _RS30835 AZOBR_RS30840: AZOBR_RS30840 - hypothetical protein, at 283,817 to 284,788 _RS30840 Position (kb) 283 284 285Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 282.830 kb on + strand, within AZOBR_RS30835at 282.831 kb on - strand, within AZOBR_RS30835at 282.839 kb on + strand, within AZOBR_RS30835at 283.818 kb on + strandat 284.304 kb on + strand, within AZOBR_RS30840at 284.304 kb on + strand, within AZOBR_RS30840at 285.140 kb on + strandat 285.140 kb on + strandat 285.140 kb on + strandat 285.140 kb on + strandat 285.141 kb on - strandat 285.141 kb on - strandat 285.141 kb on - strandat 285.141 kb on - strandat 285.329 kb on + strandat 285.330 kb on - strandat 285.330 kb on - strandat 285.467 kb on + strandat 285.549 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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282,830 + AZOBR_RS30835 0.45 +1.3
282,831 - AZOBR_RS30835 0.45 +0.3
282,839 + AZOBR_RS30835 0.46 +0.4
283,818 + -0.3
284,304 + AZOBR_RS30840 0.50 +2.5
284,304 + AZOBR_RS30840 0.50 +0.5
285,140 + +0.3
285,140 + -0.9
285,140 + -2.9
285,140 + -0.8
285,141 - +3.3
285,141 - -2.7
285,141 - +0.1
285,141 - +0.1
285,329 + +0.1
285,330 - -1.9
285,330 - -1.0
285,467 + -1.1
285,549 - +1.1

Or see this region's nucleotide sequence