Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30330 and AZOBR_RS30335 overlap by 8 nucleotides AZOBR_RS30335 and AZOBR_RS30340 overlap by 8 nucleotides AZOBR_RS30340 and AZOBR_RS30345 are separated by 139 nucleotides
AZOBR_RS30330: AZOBR_RS30330 - hypothetical protein, at 151,242 to 151,949
_RS30330
AZOBR_RS30335: AZOBR_RS30335 - hypothetical protein, at 151,942 to 154,461
_RS30335
AZOBR_RS30340: AZOBR_RS30340 - hypothetical protein, at 154,454 to 154,762
_RS30340
AZOBR_RS30345: AZOBR_RS30345 - hypothetical protein, at 154,902 to 155,093
_RS30345
Position (kb) 151
152
153
154
155 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 151.076 kb on + strand at 151.076 kb on + strand at 151.076 kb on + strand at 151.077 kb on - strand at 151.129 kb on + strand at 151.130 kb on - strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.131 kb on + strand at 151.132 kb on - strand at 151.132 kb on - strand at 151.132 kb on - strand at 151.132 kb on - strand at 151.132 kb on - strand at 151.132 kb on - strand at 151.132 kb on - strand at 151.132 kb on - strand at 151.132 kb on - strand at 151.132 kb on - strand at 151.132 kb on - strand at 151.243 kb on + strand at 151.244 kb on - strand at 151.244 kb on - strand at 151.244 kb on - strand at 151.247 kb on + strand at 151.247 kb on + strand at 151.247 kb on + strand at 151.247 kb on + strand at 151.248 kb on - strand at 151.248 kb on - strand at 151.265 kb on + strand at 151.265 kb on + strand at 151.266 kb on - strand at 151.266 kb on - strand at 151.574 kb on + strand, within AZOBR_RS30330 at 151.574 kb on + strand, within AZOBR_RS30330 at 151.574 kb on + strand, within AZOBR_RS30330 at 151.574 kb on + strand, within AZOBR_RS30330 at 151.574 kb on + strand, within AZOBR_RS30330 at 151.575 kb on - strand, within AZOBR_RS30330 at 151.575 kb on - strand, within AZOBR_RS30330 at 151.575 kb on - strand, within AZOBR_RS30330 at 151.575 kb on - strand, within AZOBR_RS30330 at 151.575 kb on - strand, within AZOBR_RS30330 at 151.575 kb on - strand, within AZOBR_RS30330 at 151.575 kb on - strand, within AZOBR_RS30330 at 151.663 kb on + strand, within AZOBR_RS30330 at 151.663 kb on + strand, within AZOBR_RS30330 at 151.663 kb on + strand, within AZOBR_RS30330 at 151.664 kb on - strand, within AZOBR_RS30330 at 151.664 kb on - strand, within AZOBR_RS30330 at 151.664 kb on - strand, within AZOBR_RS30330 at 151.664 kb on - strand, within AZOBR_RS30330 at 151.664 kb on - strand, within AZOBR_RS30330 at 151.732 kb on + strand, within AZOBR_RS30330 at 151.832 kb on + strand, within AZOBR_RS30330 at 151.832 kb on + strand, within AZOBR_RS30330 at 151.986 kb on - strand at 152.141 kb on + strand at 152.141 kb on + strand at 152.141 kb on + strand at 152.222 kb on + strand, within AZOBR_RS30335 at 152.222 kb on + strand, within AZOBR_RS30335 at 152.222 kb on + strand, within AZOBR_RS30335 at 152.223 kb on - strand, within AZOBR_RS30335 at 152.223 kb on - strand, within AZOBR_RS30335 at 152.273 kb on + strand, within AZOBR_RS30335 at 152.274 kb on - strand, within AZOBR_RS30335 at 152.274 kb on - strand, within AZOBR_RS30335 at 152.861 kb on + strand, within AZOBR_RS30335 at 152.861 kb on + strand, within AZOBR_RS30335 at 152.861 kb on + strand, within AZOBR_RS30335 at 152.861 kb on + strand, within AZOBR_RS30335 at 152.861 kb on + strand, within AZOBR_RS30335 at 152.861 kb on + strand, within AZOBR_RS30335 at 152.861 kb on + strand, within AZOBR_RS30335 at 152.861 kb on + strand, within AZOBR_RS30335 at 152.861 kb on + strand, within AZOBR_RS30335 at 152.862 kb on - strand, within AZOBR_RS30335 at 152.862 kb on - strand, within AZOBR_RS30335 at 152.862 kb on - strand, within AZOBR_RS30335 at 152.862 kb on - strand, within AZOBR_RS30335 at 152.862 kb on - strand, within AZOBR_RS30335 at 152.862 kb on - strand, within AZOBR_RS30335 at 152.862 kb on - strand, within AZOBR_RS30335 at 152.862 kb on - strand, within AZOBR_RS30335 at 152.862 kb on - strand, within AZOBR_RS30335 at 152.862 kb on - strand, within AZOBR_RS30335 at 153.046 kb on + strand, within AZOBR_RS30335 at 153.046 kb on + strand, within AZOBR_RS30335 at 153.047 kb on - strand, within AZOBR_RS30335 at 153.047 kb on - strand, within AZOBR_RS30335 at 153.221 kb on + strand, within AZOBR_RS30335 at 153.221 kb on + strand, within AZOBR_RS30335 at 153.222 kb on - strand, within AZOBR_RS30335 at 153.222 kb on - strand, within AZOBR_RS30335 at 153.222 kb on - strand, within AZOBR_RS30335 at 153.251 kb on + strand, within AZOBR_RS30335 at 153.251 kb on + strand, within AZOBR_RS30335 at 153.251 kb on + strand, within AZOBR_RS30335 at 153.251 kb on + strand, within AZOBR_RS30335 at 153.251 kb on + strand, within AZOBR_RS30335 at 153.251 kb on + strand, within AZOBR_RS30335 at 153.252 kb on - strand, within AZOBR_RS30335 at 153.347 kb on + strand, within AZOBR_RS30335 at 153.347 kb on + strand, within AZOBR_RS30335 at 153.347 kb on + strand, within AZOBR_RS30335 at 153.348 kb on - strand, within AZOBR_RS30335 at 153.348 kb on - strand, within AZOBR_RS30335 at 153.348 kb on - strand, within AZOBR_RS30335 at 153.348 kb on - strand, within AZOBR_RS30335 at 153.348 kb on - strand, within AZOBR_RS30335 at 153.870 kb on + strand, within AZOBR_RS30335 at 153.911 kb on + strand, within AZOBR_RS30335 at 153.912 kb on - strand, within AZOBR_RS30335 at 153.966 kb on + strand, within AZOBR_RS30335 at 154.025 kb on + strand, within AZOBR_RS30335 at 154.026 kb on - strand, within AZOBR_RS30335 at 154.026 kb on - strand, within AZOBR_RS30335 at 154.121 kb on + strand, within AZOBR_RS30335 at 154.121 kb on + strand, within AZOBR_RS30335 at 154.121 kb on + strand, within AZOBR_RS30335 at 154.121 kb on + strand, within AZOBR_RS30335 at 154.122 kb on - strand, within AZOBR_RS30335 at 154.122 kb on - strand, within AZOBR_RS30335 at 154.151 kb on + strand, within AZOBR_RS30335 at 154.152 kb on - strand, within AZOBR_RS30335 at 154.187 kb on + strand, within AZOBR_RS30335 at 154.188 kb on - strand, within AZOBR_RS30335 at 154.265 kb on + strand at 154.265 kb on + strand at 154.266 kb on - strand at 154.266 kb on - strand at 154.266 kb on - strand at 154.266 kb on - strand at 154.266 kb on - strand at 154.266 kb on - strand at 154.266 kb on - strand at 154.266 kb on - strand at 154.266 kb on - strand at 154.266 kb on - strand at 154.266 kb on - strand at 154.280 kb on + strand at 154.289 kb on + strand at 154.289 kb on + strand at 154.290 kb on - strand at 154.290 kb on - strand at 154.524 kb on + strand, within AZOBR_RS30340 at 154.525 kb on - strand, within AZOBR_RS30340 at 154.588 kb on + strand, within AZOBR_RS30340 at 154.650 kb on + strand, within AZOBR_RS30340 at 154.650 kb on + strand, within AZOBR_RS30340 at 154.822 kb on + strand at 154.823 kb on - strand at 155.142 kb on + strand at 155.142 kb on + strand at 155.143 kb on - strand at 155.288 kb on + strand at 155.448 kb on + strand at 155.448 kb on + strand at 155.448 kb on + strand at 155.448 kb on + strand at 155.449 kb on - strand at 155.449 kb on - strand at 155.449 kb on - strand at 155.459 kb on + strand at 155.459 kb on + strand at 155.459 kb on + strand at 155.459 kb on + strand at 155.459 kb on + strand at 155.460 kb on - strand at 155.460 kb on - strand at 155.460 kb on - strand at 155.460 kb on - strand at 155.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 151,076 + +0.7 151,076 + -1.0 151,076 + -1.2 151,077 - -1.1 151,129 + +1.3 151,130 - +1.5 151,131 + -2.0 151,131 + -0.3 151,131 + -2.6 151,131 + +0.4 151,131 + +1.4 151,131 + +0.4 151,131 + -1.1 151,131 + -0.7 151,131 + +1.8 151,131 + +0.8 151,131 + +0.2 151,131 + +0.3 151,131 + -0.0 151,131 + -0.5 151,132 - -0.1 151,132 - +0.3 151,132 - -0.3 151,132 - -1.2 151,132 - +0.3 151,132 - +2.5 151,132 - -0.2 151,132 - -0.1 151,132 - +2.5 151,132 - -0.9 151,132 - +0.6 151,243 + -1.5 151,244 - +0.9 151,244 - -0.5 151,244 - +0.3 151,247 + -0.7 151,247 + -0.1 151,247 + -0.5 151,247 + +1.5 151,248 - +0.6 151,248 - +1.1 151,265 + +0.7 151,265 + -3.1 151,266 - -0.9 151,266 - +0.1 151,574 + AZOBR_RS30330 0.47 -2.3 151,574 + AZOBR_RS30330 0.47 +1.0 151,574 + AZOBR_RS30330 0.47 +1.1 151,574 + AZOBR_RS30330 0.47 +0.4 151,574 + AZOBR_RS30330 0.47 -1.0 151,575 - AZOBR_RS30330 0.47 +0.1 151,575 - AZOBR_RS30330 0.47 +0.5 151,575 - AZOBR_RS30330 0.47 +1.2 151,575 - AZOBR_RS30330 0.47 -0.3 151,575 - AZOBR_RS30330 0.47 +0.9 151,575 - AZOBR_RS30330 0.47 +2.5 151,575 - AZOBR_RS30330 0.47 +0.3 151,663 + AZOBR_RS30330 0.59 +0.9 151,663 + AZOBR_RS30330 0.59 +0.5 151,663 + AZOBR_RS30330 0.59 -1.3 151,664 - AZOBR_RS30330 0.60 +0.1 151,664 - AZOBR_RS30330 0.60 -2.6 151,664 - AZOBR_RS30330 0.60 +0.1 151,664 - AZOBR_RS30330 0.60 +0.9 151,664 - AZOBR_RS30330 0.60 -0.8 151,732 + AZOBR_RS30330 0.69 +1.0 151,832 + AZOBR_RS30330 0.83 +1.4 151,832 + AZOBR_RS30330 0.83 +0.9 151,986 - -1.9 152,141 + -1.9 152,141 + +1.7 152,141 + +0.7 152,222 + AZOBR_RS30335 0.11 +0.4 152,222 + AZOBR_RS30335 0.11 -2.2 152,222 + AZOBR_RS30335 0.11 +0.3 152,223 - AZOBR_RS30335 0.11 -0.3 152,223 - AZOBR_RS30335 0.11 -4.3 152,273 + AZOBR_RS30335 0.13 +0.2 152,274 - AZOBR_RS30335 0.13 -1.3 152,274 - AZOBR_RS30335 0.13 -0.4 152,861 + AZOBR_RS30335 0.36 -1.2 152,861 + AZOBR_RS30335 0.36 -0.3 152,861 + AZOBR_RS30335 0.36 -0.7 152,861 + AZOBR_RS30335 0.36 -1.0 152,861 + AZOBR_RS30335 0.36 +1.4 152,861 + AZOBR_RS30335 0.36 -0.5 152,861 + AZOBR_RS30335 0.36 -2.0 152,861 + AZOBR_RS30335 0.36 +0.4 152,861 + AZOBR_RS30335 0.36 -1.2 152,862 - AZOBR_RS30335 0.37 +1.2 152,862 - AZOBR_RS30335 0.37 -1.4 152,862 - AZOBR_RS30335 0.37 +1.6 152,862 - AZOBR_RS30335 0.37 +0.1 152,862 - AZOBR_RS30335 0.37 -1.7 152,862 - AZOBR_RS30335 0.37 -0.3 152,862 - AZOBR_RS30335 0.37 -1.0 152,862 - AZOBR_RS30335 0.37 -0.2 152,862 - AZOBR_RS30335 0.37 +0.6 152,862 - AZOBR_RS30335 0.37 -0.2 153,046 + AZOBR_RS30335 0.44 -1.4 153,046 + AZOBR_RS30335 0.44 -1.0 153,047 - AZOBR_RS30335 0.44 -2.3 153,047 - AZOBR_RS30335 0.44 +0.6 153,221 + AZOBR_RS30335 0.51 +1.0 153,221 + AZOBR_RS30335 0.51 +0.5 153,222 - AZOBR_RS30335 0.51 +0.3 153,222 - AZOBR_RS30335 0.51 -0.7 153,222 - AZOBR_RS30335 0.51 -0.5 153,251 + AZOBR_RS30335 0.52 -2.8 153,251 + AZOBR_RS30335 0.52 +1.4 153,251 + AZOBR_RS30335 0.52 -2.3 153,251 + AZOBR_RS30335 0.52 -0.4 153,251 + AZOBR_RS30335 0.52 +1.1 153,251 + AZOBR_RS30335 0.52 -2.2 153,252 - AZOBR_RS30335 0.52 -2.8 153,347 + AZOBR_RS30335 0.56 -3.3 153,347 + AZOBR_RS30335 0.56 -0.1 153,347 + AZOBR_RS30335 0.56 -0.5 153,348 - AZOBR_RS30335 0.56 -0.9 153,348 - AZOBR_RS30335 0.56 -1.5 153,348 - AZOBR_RS30335 0.56 -1.1 153,348 - AZOBR_RS30335 0.56 -0.6 153,348 - AZOBR_RS30335 0.56 -0.3 153,870 + AZOBR_RS30335 0.77 +0.4 153,911 + AZOBR_RS30335 0.78 -0.5 153,912 - AZOBR_RS30335 0.78 +0.0 153,966 + AZOBR_RS30335 0.80 -0.8 154,025 + AZOBR_RS30335 0.83 +1.0 154,026 - AZOBR_RS30335 0.83 +0.6 154,026 - AZOBR_RS30335 0.83 -0.7 154,121 + AZOBR_RS30335 0.86 +1.1 154,121 + AZOBR_RS30335 0.86 -0.1 154,121 + AZOBR_RS30335 0.86 +1.6 154,121 + AZOBR_RS30335 0.86 +0.2 154,122 - AZOBR_RS30335 0.87 +0.5 154,122 - AZOBR_RS30335 0.87 -0.7 154,151 + AZOBR_RS30335 0.88 -0.9 154,152 - AZOBR_RS30335 0.88 +0.4 154,187 + AZOBR_RS30335 0.89 -1.0 154,188 - AZOBR_RS30335 0.89 +0.0 154,265 + -0.3 154,265 + -2.5 154,266 - -0.1 154,266 - -0.6 154,266 - -1.1 154,266 - +0.8 154,266 - -1.4 154,266 - +1.2 154,266 - -3.3 154,266 - -1.5 154,266 - +1.7 154,266 - -0.4 154,266 - -1.0 154,280 + -0.8 154,289 + -0.0 154,289 + -0.2 154,290 - +0.4 154,290 - +0.0 154,524 + AZOBR_RS30340 0.23 -0.5 154,525 - AZOBR_RS30340 0.23 -0.4 154,588 + AZOBR_RS30340 0.43 +2.5 154,650 + AZOBR_RS30340 0.63 +2.5 154,650 + AZOBR_RS30340 0.63 +2.6 154,822 + -0.6 154,823 - +1.1 155,142 + -1.7 155,142 + +0.1 155,143 - -0.2 155,288 + -0.2 155,448 + +1.5 155,448 + +0.2 155,448 + -1.2 155,448 + +0.5 155,449 - +0.3 155,449 - +0.4 155,449 - +2.0 155,459 + +0.7 155,459 + -0.4 155,459 + -2.0 155,459 + +2.2 155,459 + +0.1 155,460 - +1.3 155,460 - -0.9 155,460 - -2.5 155,460 - +0.2 155,460 - +2.0
Or see this region's nucleotide sequence