Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29550 and AZOBR_RS29555 overlap by 4 nucleotides AZOBR_RS29555 and AZOBR_RS29560 are separated by 117 nucleotides AZOBR_RS29560 and AZOBR_RS29565 overlap by 4 nucleotides
AZOBR_RS29550: AZOBR_RS29550 - isochorismate synthase dhbC, at 753,947 to 755,152
_RS29550
AZOBR_RS29555: AZOBR_RS29555 - enterobactin synthase subunit E, at 755,149 to 756,780
_RS29555
AZOBR_RS29560: AZOBR_RS29560 - isochorismatase, at 756,898 to 757,773
_RS29560
AZOBR_RS29565: AZOBR_RS29565 - 2 3-dihydroxybenzoate-2 3-dehydrogenase, at 757,770 to 758,522
_RS29565
Position (kb) 755
756
757 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 754.233 kb on - strand, within AZOBR_RS29550 at 754.374 kb on + strand, within AZOBR_RS29550 at 754.374 kb on + strand, within AZOBR_RS29550 at 754.375 kb on - strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.464 kb on - strand, within AZOBR_RS29550 at 754.464 kb on - strand, within AZOBR_RS29550 at 754.487 kb on + strand, within AZOBR_RS29550 at 754.658 kb on + strand, within AZOBR_RS29550 at 754.911 kb on - strand, within AZOBR_RS29550 at 755.007 kb on - strand, within AZOBR_RS29550 at 755.325 kb on - strand, within AZOBR_RS29555 at 755.779 kb on + strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 756.166 kb on + strand, within AZOBR_RS29555 at 756.166 kb on + strand, within AZOBR_RS29555 at 756.166 kb on + strand, within AZOBR_RS29555 at 756.311 kb on - strand, within AZOBR_RS29555 at 756.325 kb on + strand, within AZOBR_RS29555 at 756.328 kb on + strand, within AZOBR_RS29555 at 756.329 kb on - strand, within AZOBR_RS29555 at 756.329 kb on - strand, within AZOBR_RS29555 at 756.922 kb on + strand at 756.923 kb on - strand at 756.923 kb on - strand at 757.018 kb on + strand, within AZOBR_RS29560 at 757.018 kb on + strand, within AZOBR_RS29560 at 757.019 kb on - strand, within AZOBR_RS29560 at 757.019 kb on - strand, within AZOBR_RS29560 at 757.033 kb on + strand, within AZOBR_RS29560 at 757.034 kb on - strand, within AZOBR_RS29560 at 757.123 kb on + strand, within AZOBR_RS29560 at 757.351 kb on + strand, within AZOBR_RS29560 at 757.472 kb on - strand, within AZOBR_RS29560
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 754,233 - AZOBR_RS29550 0.24 -0.7 754,374 + AZOBR_RS29550 0.35 -0.8 754,374 + AZOBR_RS29550 0.35 -1.4 754,375 - AZOBR_RS29550 0.35 -2.0 754,463 + AZOBR_RS29550 0.43 -1.7 754,463 + AZOBR_RS29550 0.43 -1.1 754,463 + AZOBR_RS29550 0.43 -2.4 754,464 - AZOBR_RS29550 0.43 +0.3 754,464 - AZOBR_RS29550 0.43 +2.5 754,487 + AZOBR_RS29550 0.45 +0.2 754,658 + AZOBR_RS29550 0.59 -1.2 754,911 - AZOBR_RS29550 0.80 +0.8 755,007 - AZOBR_RS29550 0.88 +0.3 755,325 - AZOBR_RS29555 0.11 +0.6 755,779 + AZOBR_RS29555 0.39 -0.4 755,780 - AZOBR_RS29555 0.39 -1.9 755,780 - AZOBR_RS29555 0.39 -0.7 755,780 - AZOBR_RS29555 0.39 +1.4 755,780 - AZOBR_RS29555 0.39 -2.8 756,166 + AZOBR_RS29555 0.62 +1.4 756,166 + AZOBR_RS29555 0.62 -0.7 756,166 + AZOBR_RS29555 0.62 -0.3 756,311 - AZOBR_RS29555 0.71 -3.2 756,325 + AZOBR_RS29555 0.72 +0.5 756,328 + AZOBR_RS29555 0.72 +0.2 756,329 - AZOBR_RS29555 0.72 +0.2 756,329 - AZOBR_RS29555 0.72 +0.6 756,922 + +0.9 756,923 - +0.9 756,923 - -0.2 757,018 + AZOBR_RS29560 0.14 -1.6 757,018 + AZOBR_RS29560 0.14 +2.0 757,019 - AZOBR_RS29560 0.14 -3.9 757,019 - AZOBR_RS29560 0.14 -0.9 757,033 + AZOBR_RS29560 0.15 -0.1 757,034 - AZOBR_RS29560 0.16 +0.5 757,123 + AZOBR_RS29560 0.26 +0.3 757,351 + AZOBR_RS29560 0.52 +0.6 757,472 - AZOBR_RS29560 0.66 -0.1
Or see this region's nucleotide sequence