Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28380 and AZOBR_RS28385 are separated by 18 nucleotides AZOBR_RS28385 and AZOBR_RS28390 are separated by 916 nucleotides
AZOBR_RS28380: AZOBR_RS28380 - glycosyltransferase, at 540,004 to 541,101
_RS28380
AZOBR_RS28385: AZOBR_RS28385 - membrane protein, at 541,120 to 541,629
_RS28385
AZOBR_RS28390: AZOBR_RS28390 - hypothetical protein, at 542,546 to 542,743
_RS28390
Position (kb) 541
542 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 540.140 kb on - strand, within AZOBR_RS28380 at 540.190 kb on + strand, within AZOBR_RS28380 at 540.190 kb on + strand, within AZOBR_RS28380 at 540.191 kb on - strand, within AZOBR_RS28380 at 540.262 kb on + strand, within AZOBR_RS28380 at 540.262 kb on + strand, within AZOBR_RS28380 at 540.262 kb on + strand, within AZOBR_RS28380 at 540.263 kb on - strand, within AZOBR_RS28380 at 540.328 kb on + strand, within AZOBR_RS28380 at 540.328 kb on + strand, within AZOBR_RS28380 at 540.328 kb on + strand, within AZOBR_RS28380 at 540.329 kb on - strand, within AZOBR_RS28380 at 540.382 kb on + strand, within AZOBR_RS28380 at 540.382 kb on + strand, within AZOBR_RS28380 at 540.383 kb on - strand, within AZOBR_RS28380 at 540.383 kb on - strand, within AZOBR_RS28380 at 540.383 kb on - strand, within AZOBR_RS28380 at 540.410 kb on - strand, within AZOBR_RS28380 at 540.418 kb on + strand, within AZOBR_RS28380 at 540.418 kb on + strand, within AZOBR_RS28380 at 540.419 kb on - strand, within AZOBR_RS28380 at 540.419 kb on - strand, within AZOBR_RS28380 at 540.419 kb on - strand, within AZOBR_RS28380 at 540.419 kb on - strand, within AZOBR_RS28380 at 540.419 kb on - strand, within AZOBR_RS28380 at 540.466 kb on + strand, within AZOBR_RS28380 at 540.556 kb on + strand, within AZOBR_RS28380 at 540.556 kb on + strand, within AZOBR_RS28380 at 540.568 kb on + strand, within AZOBR_RS28380 at 540.568 kb on + strand, within AZOBR_RS28380 at 540.569 kb on - strand, within AZOBR_RS28380 at 540.661 kb on + strand, within AZOBR_RS28380 at 540.661 kb on + strand, within AZOBR_RS28380 at 540.736 kb on + strand, within AZOBR_RS28380 at 540.737 kb on - strand, within AZOBR_RS28380 at 540.737 kb on - strand, within AZOBR_RS28380 at 540.737 kb on - strand, within AZOBR_RS28380 at 541.074 kb on + strand at 541.085 kb on + strand at 541.085 kb on + strand at 541.086 kb on - strand at 541.508 kb on + strand, within AZOBR_RS28385 at 541.658 kb on + strand at 541.658 kb on + strand at 541.659 kb on - strand at 541.659 kb on - strand at 541.729 kb on + strand at 541.730 kb on - strand at 541.738 kb on + strand at 541.738 kb on + strand at 541.738 kb on + strand at 541.738 kb on + strand at 541.738 kb on + strand at 541.738 kb on + strand at 541.739 kb on - strand at 541.739 kb on - strand at 541.739 kb on - strand at 541.739 kb on - strand at 541.739 kb on - strand at 541.802 kb on - strand at 541.802 kb on - strand at 541.843 kb on - strand at 541.902 kb on + strand at 542.112 kb on - strand at 542.453 kb on - strand at 542.494 kb on + strand at 542.494 kb on + strand at 542.495 kb on - strand at 542.507 kb on + strand at 542.507 kb on + strand at 542.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 540,140 - AZOBR_RS28380 0.12 -1.4 540,190 + AZOBR_RS28380 0.17 -0.5 540,190 + AZOBR_RS28380 0.17 -2.0 540,191 - AZOBR_RS28380 0.17 -0.8 540,262 + AZOBR_RS28380 0.23 -1.1 540,262 + AZOBR_RS28380 0.23 +1.6 540,262 + AZOBR_RS28380 0.23 -0.6 540,263 - AZOBR_RS28380 0.24 +0.8 540,328 + AZOBR_RS28380 0.30 -0.4 540,328 + AZOBR_RS28380 0.30 -1.1 540,328 + AZOBR_RS28380 0.30 -1.8 540,329 - AZOBR_RS28380 0.30 -0.3 540,382 + AZOBR_RS28380 0.34 +0.7 540,382 + AZOBR_RS28380 0.34 -1.9 540,383 - AZOBR_RS28380 0.35 -1.3 540,383 - AZOBR_RS28380 0.35 +0.0 540,383 - AZOBR_RS28380 0.35 -0.8 540,410 - AZOBR_RS28380 0.37 -0.5 540,418 + AZOBR_RS28380 0.38 +0.8 540,418 + AZOBR_RS28380 0.38 -0.0 540,419 - AZOBR_RS28380 0.38 +0.6 540,419 - AZOBR_RS28380 0.38 +1.9 540,419 - AZOBR_RS28380 0.38 -0.9 540,419 - AZOBR_RS28380 0.38 -0.9 540,419 - AZOBR_RS28380 0.38 +0.6 540,466 + AZOBR_RS28380 0.42 -0.3 540,556 + AZOBR_RS28380 0.50 -0.2 540,556 + AZOBR_RS28380 0.50 -0.4 540,568 + AZOBR_RS28380 0.51 -1.6 540,568 + AZOBR_RS28380 0.51 -1.6 540,569 - AZOBR_RS28380 0.51 -3.5 540,661 + AZOBR_RS28380 0.60 -3.8 540,661 + AZOBR_RS28380 0.60 +0.2 540,736 + AZOBR_RS28380 0.67 +1.3 540,737 - AZOBR_RS28380 0.67 -2.2 540,737 - AZOBR_RS28380 0.67 -0.3 540,737 - AZOBR_RS28380 0.67 -1.7 541,074 + +2.0 541,085 + +2.5 541,085 + -1.2 541,086 - +0.0 541,508 + AZOBR_RS28385 0.76 +1.1 541,658 + -1.2 541,658 + -0.4 541,659 - +0.5 541,659 - +2.5 541,729 + +1.5 541,730 - +1.2 541,738 + -2.6 541,738 + +0.1 541,738 + -0.1 541,738 + +0.4 541,738 + -2.4 541,738 + -2.3 541,739 - +0.2 541,739 - -0.4 541,739 - -2.3 541,739 - -0.4 541,739 - -0.2 541,802 - -0.3 541,802 - +1.1 541,843 - +1.2 541,902 + -0.0 542,112 - +1.5 542,453 - -0.1 542,494 + +1.0 542,494 + -1.3 542,495 - +0.3 542,507 + +1.0 542,507 + -0.8 542,508 - +0.7
Or see this region's nucleotide sequence