Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27690 and AZOBR_RS27695 are separated by 22 nucleotides AZOBR_RS27695 and AZOBR_RS27700 are separated by 16 nucleotides
AZOBR_RS27690: AZOBR_RS27690 - hypothetical protein, at 375,891 to 376,085
_RS27690
AZOBR_RS27695: AZOBR_RS27695 - hypothetical protein, at 376,108 to 376,548
_RS27695
AZOBR_RS27700: AZOBR_RS27700 - hypothetical protein, at 376,565 to 377,827
_RS27700
Position (kb) 375
376
377 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 375.341 kb on + strand at 375.341 kb on + strand at 375.341 kb on + strand at 375.342 kb on - strand at 375.342 kb on - strand at 375.342 kb on - strand at 375.342 kb on - strand at 375.342 kb on - strand at 375.342 kb on - strand at 375.342 kb on - strand at 375.606 kb on - strand at 375.680 kb on + strand at 375.680 kb on + strand at 375.681 kb on - strand at 375.681 kb on - strand at 375.681 kb on - strand at 375.689 kb on + strand at 375.869 kb on - strand at 375.885 kb on - strand at 375.952 kb on + strand, within AZOBR_RS27690 at 375.952 kb on + strand, within AZOBR_RS27690 at 375.952 kb on + strand, within AZOBR_RS27690 at 375.952 kb on + strand, within AZOBR_RS27690 at 375.953 kb on - strand, within AZOBR_RS27690 at 375.953 kb on - strand, within AZOBR_RS27690 at 375.953 kb on - strand, within AZOBR_RS27690 at 375.953 kb on - strand, within AZOBR_RS27690 at 375.953 kb on - strand, within AZOBR_RS27690 at 376.024 kb on - strand, within AZOBR_RS27690 at 376.039 kb on + strand, within AZOBR_RS27690 at 376.040 kb on - strand, within AZOBR_RS27690 at 376.368 kb on - strand, within AZOBR_RS27695 at 376.368 kb on - strand, within AZOBR_RS27695 at 376.368 kb on - strand, within AZOBR_RS27695 at 376.397 kb on + strand, within AZOBR_RS27695 at 376.397 kb on + strand, within AZOBR_RS27695 at 376.475 kb on + strand, within AZOBR_RS27695 at 376.608 kb on + strand at 376.608 kb on + strand at 376.653 kb on + strand at 376.653 kb on + strand at 376.657 kb on + strand at 376.658 kb on - strand at 376.701 kb on + strand, within AZOBR_RS27700 at 376.701 kb on + strand, within AZOBR_RS27700 at 376.701 kb on + strand, within AZOBR_RS27700 at 376.702 kb on - strand, within AZOBR_RS27700 at 376.779 kb on + strand, within AZOBR_RS27700 at 376.779 kb on + strand, within AZOBR_RS27700 at 376.779 kb on + strand, within AZOBR_RS27700 at 376.780 kb on - strand, within AZOBR_RS27700 at 376.876 kb on + strand, within AZOBR_RS27700 at 376.876 kb on + strand, within AZOBR_RS27700 at 376.929 kb on + strand, within AZOBR_RS27700 at 376.970 kb on + strand, within AZOBR_RS27700 at 376.971 kb on - strand, within AZOBR_RS27700 at 376.971 kb on - strand, within AZOBR_RS27700 at 376.971 kb on - strand, within AZOBR_RS27700 at 376.971 kb on - strand, within AZOBR_RS27700 at 376.986 kb on + strand, within AZOBR_RS27700 at 376.987 kb on - strand, within AZOBR_RS27700 at 377.064 kb on + strand, within AZOBR_RS27700 at 377.065 kb on - strand, within AZOBR_RS27700
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 375,341 + -0.6 375,341 + +0.4 375,341 + -0.9 375,342 - -2.8 375,342 - -1.4 375,342 - +0.2 375,342 - +0.4 375,342 - +0.1 375,342 - +2.0 375,342 - -0.3 375,606 - +0.1 375,680 + -0.2 375,680 + -0.5 375,681 - -0.4 375,681 - -0.9 375,681 - -0.6 375,689 + -0.5 375,869 - -0.1 375,885 - -2.0 375,952 + AZOBR_RS27690 0.31 -3.7 375,952 + AZOBR_RS27690 0.31 -1.7 375,952 + AZOBR_RS27690 0.31 -2.3 375,952 + AZOBR_RS27690 0.31 +1.7 375,953 - AZOBR_RS27690 0.32 +0.6 375,953 - AZOBR_RS27690 0.32 +0.6 375,953 - AZOBR_RS27690 0.32 -2.1 375,953 - AZOBR_RS27690 0.32 -0.4 375,953 - AZOBR_RS27690 0.32 +0.0 376,024 - AZOBR_RS27690 0.68 -3.2 376,039 + AZOBR_RS27690 0.76 -0.6 376,040 - AZOBR_RS27690 0.76 -0.4 376,368 - AZOBR_RS27695 0.59 -0.3 376,368 - AZOBR_RS27695 0.59 -2.2 376,368 - AZOBR_RS27695 0.59 -0.6 376,397 + AZOBR_RS27695 0.66 -1.0 376,397 + AZOBR_RS27695 0.66 +0.3 376,475 + AZOBR_RS27695 0.83 +0.3 376,608 + -0.6 376,608 + +1.5 376,653 + +0.3 376,653 + -0.4 376,657 + +2.0 376,658 - -2.7 376,701 + AZOBR_RS27700 0.11 +1.4 376,701 + AZOBR_RS27700 0.11 -0.4 376,701 + AZOBR_RS27700 0.11 -0.1 376,702 - AZOBR_RS27700 0.11 +0.2 376,779 + AZOBR_RS27700 0.17 -0.4 376,779 + AZOBR_RS27700 0.17 -0.6 376,779 + AZOBR_RS27700 0.17 -0.6 376,780 - AZOBR_RS27700 0.17 +0.1 376,876 + AZOBR_RS27700 0.25 -1.4 376,876 + AZOBR_RS27700 0.25 -0.8 376,929 + AZOBR_RS27700 0.29 +0.1 376,970 + AZOBR_RS27700 0.32 -2.0 376,971 - AZOBR_RS27700 0.32 -1.9 376,971 - AZOBR_RS27700 0.32 +1.2 376,971 - AZOBR_RS27700 0.32 +0.7 376,971 - AZOBR_RS27700 0.32 -0.2 376,986 + AZOBR_RS27700 0.33 -0.4 376,987 - AZOBR_RS27700 0.33 +2.3 377,064 + AZOBR_RS27700 0.40 +0.0 377,065 - AZOBR_RS27700 0.40 +0.2
Or see this region's nucleotide sequence