Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27300

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS27295 and AZOBR_RS27300 are separated by 608 nucleotidesAZOBR_RS27300 and AZOBR_RS27305 are separated by 417 nucleotides AZOBR_RS27295: AZOBR_RS27295 - hypothetical protein, at 266,596 to 267,804 _RS27295 AZOBR_RS27300: AZOBR_RS27300 - hypothetical protein, at 268,413 to 268,670 _RS27300 AZOBR_RS27305: AZOBR_RS27305 - hypothetical protein, at 269,088 to 270,512 _RS27305 Position (kb) 268 269Strain fitness (log2 ratio) -2 -1 0 1 2at 267.490 kb on + strand, within AZOBR_RS27295at 267.565 kb on + strand, within AZOBR_RS27295at 267.566 kb on - strand, within AZOBR_RS27295at 267.637 kb on + strand, within AZOBR_RS27295at 267.638 kb on - strand, within AZOBR_RS27295at 267.638 kb on - strand, within AZOBR_RS27295at 267.638 kb on - strand, within AZOBR_RS27295at 267.670 kb on + strand, within AZOBR_RS27295at 267.670 kb on + strand, within AZOBR_RS27295at 267.670 kb on + strand, within AZOBR_RS27295at 267.671 kb on - strand, within AZOBR_RS27295at 267.671 kb on - strand, within AZOBR_RS27295at 267.671 kb on - strand, within AZOBR_RS27295at 267.725 kb on - strandat 267.868 kb on - strandat 268.031 kb on + strandat 268.031 kb on + strandat 268.032 kb on - strandat 268.032 kb on - strandat 268.032 kb on - strandat 268.032 kb on - strandat 268.053 kb on + strandat 268.056 kb on + strandat 268.755 kb on + strandat 268.755 kb on + strandat 268.756 kb on - strandat 268.756 kb on - strandat 269.265 kb on + strand, within AZOBR_RS27305at 269.266 kb on - strand, within AZOBR_RS27305at 269.295 kb on + strand, within AZOBR_RS27305at 269.604 kb on + strand, within AZOBR_RS27305at 269.604 kb on + strand, within AZOBR_RS27305

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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267,490 + AZOBR_RS27295 0.74 +0.5
267,565 + AZOBR_RS27295 0.80 +0.1
267,566 - AZOBR_RS27295 0.80 +0.1
267,637 + AZOBR_RS27295 0.86 -0.2
267,638 - AZOBR_RS27295 0.86 -2.2
267,638 - AZOBR_RS27295 0.86 +0.8
267,638 - AZOBR_RS27295 0.86 -2.0
267,670 + AZOBR_RS27295 0.89 -0.1
267,670 + AZOBR_RS27295 0.89 +1.3
267,670 + AZOBR_RS27295 0.89 -1.5
267,671 - AZOBR_RS27295 0.89 -1.7
267,671 - AZOBR_RS27295 0.89 +1.2
267,671 - AZOBR_RS27295 0.89 -1.7
267,725 - -0.7
267,868 - -0.5
268,031 + +0.3
268,031 + -0.9
268,032 - +1.2
268,032 - +0.3
268,032 - +1.1
268,032 - -0.6
268,053 + -0.4
268,056 + +0.0
268,755 + +0.7
268,755 + +0.8
268,756 - -0.5
268,756 - -0.9
269,265 + AZOBR_RS27305 0.12 +1.3
269,266 - AZOBR_RS27305 0.12 -0.9
269,295 + AZOBR_RS27305 0.15 +0.3
269,604 + AZOBR_RS27305 0.36 +0.4
269,604 + AZOBR_RS27305 0.36 +2.6

Or see this region's nucleotide sequence