Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27240 and AZOBR_RS27245 are separated by 305 nucleotides AZOBR_RS27245 and AZOBR_RS27250 are separated by 136 nucleotides
AZOBR_RS27240: AZOBR_RS27240 - hypothetical protein, at 253,316 to 255,229
_RS27240
AZOBR_RS27245: AZOBR_RS27245 - hypothetical protein, at 255,535 to 256,176
_RS27245
AZOBR_RS27250: AZOBR_RS27250 - hypothetical protein, at 256,313 to 258,367
_RS27250
Position (kb) 255
256
257 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 254.559 kb on + strand, within AZOBR_RS27240 at 254.559 kb on + strand, within AZOBR_RS27240 at 254.652 kb on + strand, within AZOBR_RS27240 at 254.717 kb on + strand, within AZOBR_RS27240 at 254.717 kb on + strand, within AZOBR_RS27240 at 254.916 kb on + strand, within AZOBR_RS27240 at 254.917 kb on - strand, within AZOBR_RS27240 at 254.917 kb on - strand, within AZOBR_RS27240 at 255.427 kb on - strand at 255.653 kb on + strand, within AZOBR_RS27245 at 256.505 kb on + strand at 256.505 kb on + strand at 256.505 kb on + strand at 256.506 kb on - strand at 256.526 kb on - strand, within AZOBR_RS27250 at 256.527 kb on + strand, within AZOBR_RS27250 at 256.527 kb on + strand, within AZOBR_RS27250 at 256.528 kb on - strand, within AZOBR_RS27250 at 256.528 kb on - strand, within AZOBR_RS27250 at 256.544 kb on + strand, within AZOBR_RS27250 at 256.544 kb on + strand, within AZOBR_RS27250 at 256.544 kb on + strand, within AZOBR_RS27250 at 256.545 kb on - strand, within AZOBR_RS27250 at 257.090 kb on + strand, within AZOBR_RS27250 at 257.090 kb on + strand, within AZOBR_RS27250 at 257.090 kb on + strand, within AZOBR_RS27250 at 257.091 kb on - strand, within AZOBR_RS27250 at 257.091 kb on - strand, within AZOBR_RS27250 at 257.091 kb on - strand, within AZOBR_RS27250
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 254,559 + AZOBR_RS27240 0.65 +0.6 254,559 + AZOBR_RS27240 0.65 +0.2 254,652 + AZOBR_RS27240 0.70 -0.4 254,717 + AZOBR_RS27240 0.73 +0.3 254,717 + AZOBR_RS27240 0.73 +1.4 254,916 + AZOBR_RS27240 0.84 -1.1 254,917 - AZOBR_RS27240 0.84 +0.8 254,917 - AZOBR_RS27240 0.84 -0.4 255,427 - +2.2 255,653 + AZOBR_RS27245 0.18 -2.7 256,505 + -2.4 256,505 + -1.4 256,505 + -1.3 256,506 - +0.4 256,526 - AZOBR_RS27250 0.10 -0.2 256,527 + AZOBR_RS27250 0.10 +0.7 256,527 + AZOBR_RS27250 0.10 -0.2 256,528 - AZOBR_RS27250 0.10 +0.9 256,528 - AZOBR_RS27250 0.10 -0.2 256,544 + AZOBR_RS27250 0.11 +0.0 256,544 + AZOBR_RS27250 0.11 +0.7 256,544 + AZOBR_RS27250 0.11 +0.8 256,545 - AZOBR_RS27250 0.11 +0.1 257,090 + AZOBR_RS27250 0.38 +0.6 257,090 + AZOBR_RS27250 0.38 -0.6 257,090 + AZOBR_RS27250 0.38 +1.4 257,091 - AZOBR_RS27250 0.38 +0.3 257,091 - AZOBR_RS27250 0.38 -0.4 257,091 - AZOBR_RS27250 0.38 -3.0
Or see this region's nucleotide sequence