Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27120 and AZOBR_RS27125 are separated by 38 nucleotides AZOBR_RS27125 and AZOBR_RS27130 are separated by 35 nucleotides AZOBR_RS27130 and AZOBR_RS27135 are separated by 56 nucleotides AZOBR_RS27135 and AZOBR_RS27140 are separated by 102 nucleotides
AZOBR_RS27120: AZOBR_RS27120 - FAD-dependent oxidoreductase, at 230,227 to 231,354
_RS27120
AZOBR_RS27125: AZOBR_RS27125 - endoribonuclease, at 231,393 to 231,755
_RS27125
AZOBR_RS27130: AZOBR_RS27130 - polyamine ABC transporter substrate-binding protein, at 231,791 to 232,570
_RS27130
AZOBR_RS27135: AZOBR_RS27135 - endoribonuclease L-PSP, at 232,627 to 232,974
_RS27135
AZOBR_RS27140: AZOBR_RS27140 - membrane protein, at 233,077 to 233,748
_RS27140
Position (kb) 231
232
233 Strain fitness (log2 ratio) -1
0
1
2 at 231.459 kb on + strand, within AZOBR_RS27125 at 231.606 kb on + strand, within AZOBR_RS27125 at 231.607 kb on - strand, within AZOBR_RS27125 at 231.764 kb on + strand at 231.773 kb on - strand at 232.121 kb on + strand, within AZOBR_RS27130 at 232.121 kb on + strand, within AZOBR_RS27130 at 232.121 kb on + strand, within AZOBR_RS27130 at 232.121 kb on + strand, within AZOBR_RS27130 at 232.121 kb on + strand, within AZOBR_RS27130 at 232.121 kb on + strand, within AZOBR_RS27130 at 232.122 kb on - strand, within AZOBR_RS27130 at 232.122 kb on - strand, within AZOBR_RS27130 at 232.131 kb on + strand, within AZOBR_RS27130 at 232.139 kb on + strand, within AZOBR_RS27130 at 232.140 kb on - strand, within AZOBR_RS27130 at 232.277 kb on + strand, within AZOBR_RS27130 at 232.277 kb on + strand, within AZOBR_RS27130 at 232.277 kb on + strand, within AZOBR_RS27130 at 232.278 kb on - strand, within AZOBR_RS27130 at 232.544 kb on + strand at 232.544 kb on + strand at 232.545 kb on - strand at 232.545 kb on - strand at 232.602 kb on - strand at 233.135 kb on + strand at 233.135 kb on + strand at 233.136 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 231,459 + AZOBR_RS27125 0.18 -0.7 231,606 + AZOBR_RS27125 0.59 +2.4 231,607 - AZOBR_RS27125 0.59 -0.3 231,764 + +0.8 231,773 - +0.4 232,121 + AZOBR_RS27130 0.42 +1.6 232,121 + AZOBR_RS27130 0.42 -0.6 232,121 + AZOBR_RS27130 0.42 +0.6 232,121 + AZOBR_RS27130 0.42 +0.3 232,121 + AZOBR_RS27130 0.42 +2.2 232,121 + AZOBR_RS27130 0.42 +0.2 232,122 - AZOBR_RS27130 0.42 +0.5 232,122 - AZOBR_RS27130 0.42 +0.7 232,131 + AZOBR_RS27130 0.44 +0.7 232,139 + AZOBR_RS27130 0.45 +2.4 232,140 - AZOBR_RS27130 0.45 +0.9 232,277 + AZOBR_RS27130 0.62 -1.0 232,277 + AZOBR_RS27130 0.62 -0.6 232,277 + AZOBR_RS27130 0.62 +0.2 232,278 - AZOBR_RS27130 0.62 +0.5 232,544 + +0.6 232,544 + +0.4 232,545 - -1.3 232,545 - -1.0 232,602 - -0.5 233,135 + -0.4 233,135 + -0.4 233,136 - -0.5
Or see this region's nucleotide sequence