Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26780 and AZOBR_RS26785 are separated by 659 nucleotides AZOBR_RS26785 and AZOBR_RS26790 are separated by 412 nucleotides
AZOBR_RS26780: AZOBR_RS26780 - hypothetical protein, at 157,832 to 159,070
_RS26780
AZOBR_RS26785: AZOBR_RS26785 - hypothetical protein, at 159,730 to 159,984
_RS26785
AZOBR_RS26790: AZOBR_RS26790 - copper-containing nitrite reductase, at 160,397 to 161,461
_RS26790
Position (kb) 159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 158.748 kb on + strand, within AZOBR_RS26780 at 158.778 kb on + strand, within AZOBR_RS26780 at 158.778 kb on + strand, within AZOBR_RS26780 at 158.778 kb on + strand, within AZOBR_RS26780 at 158.778 kb on + strand, within AZOBR_RS26780 at 158.779 kb on - strand, within AZOBR_RS26780 at 158.892 kb on + strand, within AZOBR_RS26780 at 158.893 kb on - strand, within AZOBR_RS26780 at 158.893 kb on - strand, within AZOBR_RS26780 at 158.893 kb on - strand, within AZOBR_RS26780 at 159.163 kb on + strand at 159.173 kb on + strand at 159.174 kb on - strand at 159.174 kb on - strand at 159.174 kb on - strand at 159.175 kb on + strand at 159.175 kb on + strand at 159.176 kb on - strand at 159.207 kb on + strand at 159.207 kb on + strand at 159.207 kb on + strand at 159.208 kb on - strand at 159.208 kb on - strand at 159.504 kb on + strand at 159.505 kb on - strand at 159.554 kb on - strand at 159.742 kb on - strand at 159.840 kb on + strand, within AZOBR_RS26785 at 159.840 kb on + strand, within AZOBR_RS26785 at 159.841 kb on - strand, within AZOBR_RS26785 at 159.979 kb on + strand at 160.020 kb on + strand at 160.021 kb on - strand at 160.021 kb on - strand at 160.221 kb on - strand at 160.484 kb on + strand at 160.485 kb on - strand at 160.640 kb on + strand, within AZOBR_RS26790 at 160.640 kb on + strand, within AZOBR_RS26790 at 160.640 kb on + strand, within AZOBR_RS26790 at 160.641 kb on - strand, within AZOBR_RS26790 at 160.641 kb on - strand, within AZOBR_RS26790 at 160.646 kb on + strand, within AZOBR_RS26790 at 160.646 kb on + strand, within AZOBR_RS26790 at 160.646 kb on + strand, within AZOBR_RS26790 at 160.647 kb on - strand, within AZOBR_RS26790 at 160.859 kb on + strand, within AZOBR_RS26790 at 160.859 kb on + strand, within AZOBR_RS26790 at 160.859 kb on + strand, within AZOBR_RS26790 at 160.859 kb on + strand, within AZOBR_RS26790 at 160.860 kb on - strand, within AZOBR_RS26790 at 160.860 kb on - strand, within AZOBR_RS26790 at 160.860 kb on - strand, within AZOBR_RS26790 at 160.865 kb on + strand, within AZOBR_RS26790 at 160.866 kb on - strand, within AZOBR_RS26790 at 160.866 kb on - strand, within AZOBR_RS26790 at 160.970 kb on + strand, within AZOBR_RS26790 at 160.970 kb on + strand, within AZOBR_RS26790 at 160.971 kb on - strand, within AZOBR_RS26790
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 158,748 + AZOBR_RS26780 0.74 +0.1 158,778 + AZOBR_RS26780 0.76 +0.2 158,778 + AZOBR_RS26780 0.76 +1.4 158,778 + AZOBR_RS26780 0.76 +0.4 158,778 + AZOBR_RS26780 0.76 +0.3 158,779 - AZOBR_RS26780 0.76 -0.2 158,892 + AZOBR_RS26780 0.86 +0.4 158,893 - AZOBR_RS26780 0.86 +0.9 158,893 - AZOBR_RS26780 0.86 +1.4 158,893 - AZOBR_RS26780 0.86 -0.0 159,163 + -0.2 159,173 + -0.3 159,174 - -0.0 159,174 - +0.4 159,174 - -0.2 159,175 + +0.2 159,175 + -1.5 159,176 - -0.9 159,207 + -0.4 159,207 + -1.1 159,207 + +0.4 159,208 - -0.3 159,208 - -0.4 159,504 + +0.3 159,505 - +0.2 159,554 - +0.2 159,742 - -2.0 159,840 + AZOBR_RS26785 0.43 +0.0 159,840 + AZOBR_RS26785 0.43 +0.7 159,841 - AZOBR_RS26785 0.44 +1.0 159,979 + +1.9 160,020 + +2.7 160,021 - -0.6 160,021 - +0.5 160,221 - -0.6 160,484 + +0.9 160,485 - -0.7 160,640 + AZOBR_RS26790 0.23 -3.2 160,640 + AZOBR_RS26790 0.23 +0.6 160,640 + AZOBR_RS26790 0.23 -0.5 160,641 - AZOBR_RS26790 0.23 +0.8 160,641 - AZOBR_RS26790 0.23 +0.4 160,646 + AZOBR_RS26790 0.23 -0.1 160,646 + AZOBR_RS26790 0.23 -1.2 160,646 + AZOBR_RS26790 0.23 +0.1 160,647 - AZOBR_RS26790 0.23 -0.3 160,859 + AZOBR_RS26790 0.43 -1.5 160,859 + AZOBR_RS26790 0.43 -0.6 160,859 + AZOBR_RS26790 0.43 -1.8 160,859 + AZOBR_RS26790 0.43 -0.7 160,860 - AZOBR_RS26790 0.43 -3.0 160,860 - AZOBR_RS26790 0.43 +0.8 160,860 - AZOBR_RS26790 0.43 +0.0 160,865 + AZOBR_RS26790 0.44 +0.2 160,866 - AZOBR_RS26790 0.44 -0.1 160,866 - AZOBR_RS26790 0.44 -1.4 160,970 + AZOBR_RS26790 0.54 +1.6 160,970 + AZOBR_RS26790 0.54 -0.8 160,971 - AZOBR_RS26790 0.54 -1.8
Or see this region's nucleotide sequence