Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25555 and AZOBR_RS25560 are separated by 97 nucleotides AZOBR_RS25560 and AZOBR_RS25565 are separated by 134 nucleotides AZOBR_RS25565 and AZOBR_RS25570 are separated by 76 nucleotides
AZOBR_RS25555: AZOBR_RS25555 - hypothetical protein, at 783,227 to 784,078
_RS25555
AZOBR_RS25560: AZOBR_RS25560 - hypothetical protein, at 784,176 to 784,658
_RS25560
AZOBR_RS25565: AZOBR_RS25565 - hypothetical protein, at 784,793 to 785,554
_RS25565
AZOBR_RS25570: AZOBR_RS25570 - hypothetical protein, at 785,631 to 786,425
_RS25570
Position (kb) 784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 783.303 kb on + strand at 783.529 kb on - strand, within AZOBR_RS25555 at 783.529 kb on - strand, within AZOBR_RS25555 at 783.948 kb on + strand, within AZOBR_RS25555 at 783.948 kb on + strand, within AZOBR_RS25555 at 783.949 kb on - strand, within AZOBR_RS25555 at 783.949 kb on - strand, within AZOBR_RS25555 at 783.949 kb on - strand, within AZOBR_RS25555 at 783.949 kb on - strand, within AZOBR_RS25555 at 783.952 kb on - strand, within AZOBR_RS25555 at 783.952 kb on - strand, within AZOBR_RS25555 at 783.952 kb on - strand, within AZOBR_RS25555 at 784.292 kb on - strand, within AZOBR_RS25560 at 784.523 kb on + strand, within AZOBR_RS25560 at 784.686 kb on + strand at 785.145 kb on + strand, within AZOBR_RS25565 at 785.145 kb on + strand, within AZOBR_RS25565 at 785.145 kb on + strand, within AZOBR_RS25565 at 785.145 kb on + strand, within AZOBR_RS25565 at 785.145 kb on + strand, within AZOBR_RS25565 at 785.146 kb on - strand, within AZOBR_RS25565 at 785.146 kb on - strand, within AZOBR_RS25565 at 785.146 kb on - strand, within AZOBR_RS25565 at 785.146 kb on - strand, within AZOBR_RS25565 at 785.146 kb on - strand, within AZOBR_RS25565 at 785.146 kb on - strand, within AZOBR_RS25565 at 785.146 kb on - strand, within AZOBR_RS25565 at 785.146 kb on - strand, within AZOBR_RS25565 at 785.146 kb on - strand, within AZOBR_RS25565 at 785.632 kb on + strand at 785.633 kb on - strand at 785.633 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 783,303 + +1.2 783,529 - AZOBR_RS25555 0.35 +0.6 783,529 - AZOBR_RS25555 0.35 -2.3 783,948 + AZOBR_RS25555 0.85 +0.9 783,948 + AZOBR_RS25555 0.85 +0.0 783,949 - AZOBR_RS25555 0.85 +0.2 783,949 - AZOBR_RS25555 0.85 -0.8 783,949 - AZOBR_RS25555 0.85 +0.6 783,949 - AZOBR_RS25555 0.85 -0.1 783,952 - AZOBR_RS25555 0.85 -0.7 783,952 - AZOBR_RS25555 0.85 -0.0 783,952 - AZOBR_RS25555 0.85 +0.0 784,292 - AZOBR_RS25560 0.24 -0.9 784,523 + AZOBR_RS25560 0.72 -2.8 784,686 + -0.3 785,145 + AZOBR_RS25565 0.46 +0.1 785,145 + AZOBR_RS25565 0.46 -1.8 785,145 + AZOBR_RS25565 0.46 +0.2 785,145 + AZOBR_RS25565 0.46 -0.4 785,145 + AZOBR_RS25565 0.46 -1.7 785,146 - AZOBR_RS25565 0.46 -0.4 785,146 - AZOBR_RS25565 0.46 +2.2 785,146 - AZOBR_RS25565 0.46 -0.3 785,146 - AZOBR_RS25565 0.46 -0.9 785,146 - AZOBR_RS25565 0.46 -1.4 785,146 - AZOBR_RS25565 0.46 -3.1 785,146 - AZOBR_RS25565 0.46 -2.6 785,146 - AZOBR_RS25565 0.46 +0.5 785,146 - AZOBR_RS25565 0.46 -0.8 785,632 + -2.5 785,633 - -2.0 785,633 - +2.2
Or see this region's nucleotide sequence