Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24065 and AZOBR_RS24070 are separated by 296 nucleotides AZOBR_RS24070 and AZOBR_RS24075 are separated by 72 nucleotides AZOBR_RS24075 and AZOBR_RS24080 are separated by 116 nucleotides
AZOBR_RS24065: AZOBR_RS24065 - aspartate aminotransferase, at 437,511 to 438,689
_RS24065
AZOBR_RS24070: AZOBR_RS24070 - acetyl-CoA hydrolase, at 438,986 to 440,479
_RS24070
AZOBR_RS24075: AZOBR_RS24075 - hypothetical protein, at 440,552 to 440,905
_RS24075
AZOBR_RS24080: AZOBR_RS24080 - methyl-accepting chemotaxis protein, at 441,022 to 442,725
_RS24080
Position (kb) 438
439
440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 438.073 kb on + strand, within AZOBR_RS24065 at 438.073 kb on + strand, within AZOBR_RS24065 at 438.304 kb on + strand, within AZOBR_RS24065 at 438.305 kb on - strand, within AZOBR_RS24065 at 438.305 kb on - strand, within AZOBR_RS24065 at 438.305 kb on - strand, within AZOBR_RS24065 at 438.313 kb on + strand, within AZOBR_RS24065 at 438.314 kb on - strand, within AZOBR_RS24065 at 438.496 kb on + strand, within AZOBR_RS24065 at 438.496 kb on + strand, within AZOBR_RS24065 at 438.496 kb on + strand, within AZOBR_RS24065 at 438.497 kb on - strand, within AZOBR_RS24065 at 438.755 kb on - strand at 438.755 kb on - strand at 438.881 kb on + strand at 438.881 kb on + strand at 438.882 kb on - strand at 438.899 kb on + strand at 438.990 kb on - strand at 438.990 kb on - strand at 438.990 kb on - strand at 439.520 kb on + strand, within AZOBR_RS24070 at 439.520 kb on + strand, within AZOBR_RS24070 at 439.520 kb on + strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.841 kb on + strand, within AZOBR_RS24070 at 439.841 kb on + strand, within AZOBR_RS24070 at 439.841 kb on + strand, within AZOBR_RS24070 at 439.842 kb on - strand, within AZOBR_RS24070 at 439.842 kb on - strand, within AZOBR_RS24070 at 439.842 kb on - strand, within AZOBR_RS24070 at 439.842 kb on - strand, within AZOBR_RS24070 at 439.842 kb on - strand, within AZOBR_RS24070 at 439.937 kb on + strand, within AZOBR_RS24070 at 439.967 kb on + strand, within AZOBR_RS24070 at 439.967 kb on + strand, within AZOBR_RS24070 at 439.967 kb on + strand, within AZOBR_RS24070 at 439.968 kb on - strand, within AZOBR_RS24070 at 439.968 kb on - strand, within AZOBR_RS24070 at 439.968 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.372 kb on + strand at 440.706 kb on + strand, within AZOBR_RS24075 at 440.707 kb on - strand, within AZOBR_RS24075 at 440.707 kb on - strand, within AZOBR_RS24075 at 440.793 kb on + strand, within AZOBR_RS24075 at 440.941 kb on + strand at 440.941 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 438,073 + AZOBR_RS24065 0.48 +0.0 438,073 + AZOBR_RS24065 0.48 -2.7 438,304 + AZOBR_RS24065 0.67 +0.5 438,305 - AZOBR_RS24065 0.67 +0.2 438,305 - AZOBR_RS24065 0.67 -1.9 438,305 - AZOBR_RS24065 0.67 -3.0 438,313 + AZOBR_RS24065 0.68 -0.7 438,314 - AZOBR_RS24065 0.68 +0.3 438,496 + AZOBR_RS24065 0.84 +0.3 438,496 + AZOBR_RS24065 0.84 -1.6 438,496 + AZOBR_RS24065 0.84 +0.3 438,497 - AZOBR_RS24065 0.84 +2.2 438,755 - +1.0 438,755 - +1.1 438,881 + -0.8 438,881 + -0.1 438,882 - +0.5 438,899 + -1.4 438,990 - +0.1 438,990 - -0.0 438,990 - +0.0 439,520 + AZOBR_RS24070 0.36 +0.6 439,520 + AZOBR_RS24070 0.36 -0.5 439,520 + AZOBR_RS24070 0.36 -1.4 439,521 - AZOBR_RS24070 0.36 +0.5 439,521 - AZOBR_RS24070 0.36 -1.2 439,521 - AZOBR_RS24070 0.36 -3.3 439,521 - AZOBR_RS24070 0.36 +0.8 439,521 - AZOBR_RS24070 0.36 +1.1 439,841 + AZOBR_RS24070 0.57 +3.6 439,841 + AZOBR_RS24070 0.57 -0.1 439,841 + AZOBR_RS24070 0.57 -2.1 439,842 - AZOBR_RS24070 0.57 -0.2 439,842 - AZOBR_RS24070 0.57 +0.9 439,842 - AZOBR_RS24070 0.57 -1.9 439,842 - AZOBR_RS24070 0.57 +1.3 439,842 - AZOBR_RS24070 0.57 -0.5 439,937 + AZOBR_RS24070 0.64 +0.6 439,967 + AZOBR_RS24070 0.66 -1.6 439,967 + AZOBR_RS24070 0.66 +0.1 439,967 + AZOBR_RS24070 0.66 +0.5 439,968 - AZOBR_RS24070 0.66 +0.5 439,968 - AZOBR_RS24070 0.66 -0.3 439,968 - AZOBR_RS24070 0.66 +0.8 440,073 - AZOBR_RS24070 0.73 -2.2 440,073 - AZOBR_RS24070 0.73 -1.1 440,073 - AZOBR_RS24070 0.73 -0.9 440,073 - AZOBR_RS24070 0.73 +1.3 440,372 + +0.1 440,706 + AZOBR_RS24075 0.44 -0.3 440,707 - AZOBR_RS24075 0.44 -1.1 440,707 - AZOBR_RS24075 0.44 -0.9 440,793 + AZOBR_RS24075 0.68 -0.9 440,941 + -2.8 440,941 + +0.5
Or see this region's nucleotide sequence