Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23575

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23575 and AZOBR_RS23580 are separated by 221 nucleotides AZOBR_RS23575: AZOBR_RS23575 - ABC transporter, at 320,464 to 321,519 _RS23575 AZOBR_RS23580: AZOBR_RS23580 - membrane protein, at 321,741 to 322,877 _RS23580 Position (kb) 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2at 320.392 kb on - strandat 320.392 kb on - strandat 320.392 kb on - strandat 320.719 kb on + strand, within AZOBR_RS23575at 320.719 kb on + strand, within AZOBR_RS23575at 320.720 kb on - strand, within AZOBR_RS23575at 320.941 kb on + strand, within AZOBR_RS23575at 320.941 kb on + strand, within AZOBR_RS23575at 320.941 kb on + strand, within AZOBR_RS23575at 320.941 kb on + strand, within AZOBR_RS23575at 320.942 kb on - strand, within AZOBR_RS23575at 321.365 kb on - strand, within AZOBR_RS23575at 321.365 kb on - strand, within AZOBR_RS23575at 321.649 kb on + strandat 322.192 kb on - strand, within AZOBR_RS23580at 322.211 kb on + strand, within AZOBR_RS23580at 322.212 kb on - strand, within AZOBR_RS23580

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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320,392 - -1.2
320,392 - -0.9
320,392 - +2.3
320,719 + AZOBR_RS23575 0.24 +1.1
320,719 + AZOBR_RS23575 0.24 +1.3
320,720 - AZOBR_RS23575 0.24 -1.8
320,941 + AZOBR_RS23575 0.45 +0.4
320,941 + AZOBR_RS23575 0.45 +0.1
320,941 + AZOBR_RS23575 0.45 -1.1
320,941 + AZOBR_RS23575 0.45 -1.4
320,942 - AZOBR_RS23575 0.45 -0.9
321,365 - AZOBR_RS23575 0.85 -2.2
321,365 - AZOBR_RS23575 0.85 -0.3
321,649 + -1.5
322,192 - AZOBR_RS23580 0.40 -0.7
322,211 + AZOBR_RS23580 0.41 +1.5
322,212 - AZOBR_RS23580 0.41 +0.4

Or see this region's nucleotide sequence