Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22955 and AZOBR_RS22960 overlap by 49 nucleotides AZOBR_RS22960 and AZOBR_RS22965 are separated by 2 nucleotides AZOBR_RS22965 and AZOBR_RS22970 overlap by 14 nucleotides AZOBR_RS22970 and AZOBR_RS22975 are separated by 144 nucleotides
AZOBR_RS22955: AZOBR_RS22955 - oxidoreductase domain protein (fragment), at 162,219 to 164,045
_RS22955
AZOBR_RS22960: AZOBR_RS22960 - hypothetical protein, at 163,997 to 164,485
_RS22960
AZOBR_RS22965: AZOBR_RS22965 - hypothetical protein, at 164,488 to 165,747
_RS22965
AZOBR_RS22970: AZOBR_RS22970 - hypothetical protein, at 165,734 to 166,156
_RS22970
AZOBR_RS22975: AZOBR_RS22975 - glycosyl transferase group 1 (fragment), at 166,301 to 166,960
_RS22975
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 163.494 kb on + strand, within AZOBR_RS22955 at 163.495 kb on - strand, within AZOBR_RS22955 at 163.603 kb on - strand, within AZOBR_RS22955 at 163.665 kb on + strand, within AZOBR_RS22955 at 163.665 kb on + strand, within AZOBR_RS22955 at 163.666 kb on - strand, within AZOBR_RS22955 at 163.666 kb on - strand, within AZOBR_RS22955 at 163.666 kb on - strand, within AZOBR_RS22955 at 163.858 kb on - strand, within AZOBR_RS22955 at 164.192 kb on + strand, within AZOBR_RS22960 at 164.193 kb on - strand, within AZOBR_RS22960 at 164.193 kb on - strand, within AZOBR_RS22960 at 164.259 kb on - strand, within AZOBR_RS22960 at 164.357 kb on + strand, within AZOBR_RS22960 at 164.602 kb on + strand at 164.837 kb on - strand, within AZOBR_RS22965 at 164.929 kb on + strand, within AZOBR_RS22965 at 164.929 kb on + strand, within AZOBR_RS22965 at 164.930 kb on - strand, within AZOBR_RS22965 at 164.948 kb on + strand, within AZOBR_RS22965 at 165.401 kb on - strand, within AZOBR_RS22965 at 165.403 kb on + strand, within AZOBR_RS22965 at 165.404 kb on - strand, within AZOBR_RS22965 at 165.404 kb on - strand, within AZOBR_RS22965 at 165.404 kb on - strand, within AZOBR_RS22965 at 165.448 kb on + strand, within AZOBR_RS22965 at 165.449 kb on - strand, within AZOBR_RS22965 at 165.520 kb on + strand, within AZOBR_RS22965 at 165.544 kb on + strand, within AZOBR_RS22965 at 165.544 kb on + strand, within AZOBR_RS22965 at 165.544 kb on + strand, within AZOBR_RS22965 at 165.545 kb on - strand, within AZOBR_RS22965 at 165.545 kb on - strand, within AZOBR_RS22965 at 165.550 kb on + strand, within AZOBR_RS22965 at 165.551 kb on - strand, within AZOBR_RS22965 at 165.640 kb on + strand at 165.640 kb on + strand at 165.707 kb on - strand at 165.707 kb on - strand at 165.709 kb on + strand at 165.709 kb on + strand at 165.709 kb on + strand at 165.709 kb on + strand at 165.709 kb on + strand at 165.710 kb on - strand at 165.710 kb on - strand at 166.183 kb on + strand at 166.183 kb on + strand at 166.183 kb on + strand at 166.183 kb on + strand at 166.184 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 163,494 + AZOBR_RS22955 0.70 +0.1 163,495 - AZOBR_RS22955 0.70 +0.4 163,603 - AZOBR_RS22955 0.76 +0.5 163,665 + AZOBR_RS22955 0.79 +1.4 163,665 + AZOBR_RS22955 0.79 +0.2 163,666 - AZOBR_RS22955 0.79 +0.3 163,666 - AZOBR_RS22955 0.79 -1.6 163,666 - AZOBR_RS22955 0.79 -2.7 163,858 - AZOBR_RS22955 0.90 +0.3 164,192 + AZOBR_RS22960 0.40 -1.9 164,193 - AZOBR_RS22960 0.40 +0.9 164,193 - AZOBR_RS22960 0.40 -1.5 164,259 - AZOBR_RS22960 0.54 -0.4 164,357 + AZOBR_RS22960 0.74 -1.7 164,602 + -0.5 164,837 - AZOBR_RS22965 0.28 -0.6 164,929 + AZOBR_RS22965 0.35 +0.2 164,929 + AZOBR_RS22965 0.35 -2.9 164,930 - AZOBR_RS22965 0.35 -1.1 164,948 + AZOBR_RS22965 0.37 -0.1 165,401 - AZOBR_RS22965 0.72 -0.9 165,403 + AZOBR_RS22965 0.73 +0.1 165,404 - AZOBR_RS22965 0.73 -0.8 165,404 - AZOBR_RS22965 0.73 -2.2 165,404 - AZOBR_RS22965 0.73 -0.2 165,448 + AZOBR_RS22965 0.76 -0.4 165,449 - AZOBR_RS22965 0.76 +0.3 165,520 + AZOBR_RS22965 0.82 -0.0 165,544 + AZOBR_RS22965 0.84 +1.3 165,544 + AZOBR_RS22965 0.84 -2.3 165,544 + AZOBR_RS22965 0.84 -1.6 165,545 - AZOBR_RS22965 0.84 +0.6 165,545 - AZOBR_RS22965 0.84 -0.1 165,550 + AZOBR_RS22965 0.84 -2.4 165,551 - AZOBR_RS22965 0.84 +1.8 165,640 + -0.9 165,640 + +0.7 165,707 - -0.2 165,707 - +0.2 165,709 + +0.6 165,709 + +1.3 165,709 + +0.2 165,709 + +0.1 165,709 + -0.8 165,710 - -0.3 165,710 - +0.6 166,183 + +0.2 166,183 + +1.0 166,183 + +0.1 166,183 + +0.0 166,184 - -0.1
Or see this region's nucleotide sequence