Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22505 and AZOBR_RS22510 are separated by 176 nucleotides AZOBR_RS22510 and AZOBR_RS22515 are separated by 79 nucleotides AZOBR_RS22515 and AZOBR_RS22520 are separated by 196 nucleotides
AZOBR_RS22505: AZOBR_RS22505 - omega amino acid--pyruvate aminotransferase, at 60,240 to 61,550
_RS22505
AZOBR_RS22510: AZOBR_RS22510 - LysR family transcriptional regulator, at 61,727 to 62,689
_RS22510
AZOBR_RS22515: AZOBR_RS22515 - membrane protein of unknown function, at 62,769 to 63,329
_RS22515
AZOBR_RS22520: AZOBR_RS22520 - hypothetical protein, at 63,526 to 63,918
_RS22520
Position (kb) 61
62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 61.183 kb on + strand, within AZOBR_RS22505 at 61.330 kb on + strand, within AZOBR_RS22505 at 61.330 kb on + strand, within AZOBR_RS22505 at 61.331 kb on - strand, within AZOBR_RS22505 at 61.331 kb on - strand, within AZOBR_RS22505 at 61.331 kb on - strand, within AZOBR_RS22505 at 61.424 kb on - strand at 61.703 kb on - strand at 61.718 kb on + strand at 61.719 kb on - strand at 61.719 kb on - strand at 61.722 kb on + strand at 61.723 kb on - strand at 61.723 kb on - strand at 62.276 kb on + strand, within AZOBR_RS22510 at 62.277 kb on - strand, within AZOBR_RS22510 at 62.277 kb on - strand, within AZOBR_RS22510 at 62.465 kb on + strand, within AZOBR_RS22510 at 62.466 kb on - strand, within AZOBR_RS22510 at 62.490 kb on - strand, within AZOBR_RS22510 at 62.549 kb on + strand, within AZOBR_RS22510 at 62.802 kb on + strand at 62.802 kb on + strand at 62.802 kb on + strand at 63.377 kb on + strand at 63.378 kb on - strand at 63.525 kb on + strand at 63.525 kb on + strand at 63.526 kb on - strand at 63.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 61,183 + AZOBR_RS22505 0.72 -0.1 61,330 + AZOBR_RS22505 0.83 +0.5 61,330 + AZOBR_RS22505 0.83 +0.1 61,331 - AZOBR_RS22505 0.83 +0.8 61,331 - AZOBR_RS22505 0.83 +0.3 61,331 - AZOBR_RS22505 0.83 +0.3 61,424 - -1.7 61,703 - -0.0 61,718 + -1.0 61,719 - -3.2 61,719 - +1.8 61,722 + -1.5 61,723 - +1.4 61,723 - +0.5 62,276 + AZOBR_RS22510 0.57 +0.9 62,277 - AZOBR_RS22510 0.57 -0.4 62,277 - AZOBR_RS22510 0.57 +1.2 62,465 + AZOBR_RS22510 0.77 +0.6 62,466 - AZOBR_RS22510 0.77 +0.6 62,490 - AZOBR_RS22510 0.79 +1.0 62,549 + AZOBR_RS22510 0.85 -0.0 62,802 + -1.5 62,802 + +0.7 62,802 + +0.3 63,377 + -0.3 63,378 - -1.0 63,525 + -0.5 63,525 + -0.5 63,526 - +1.2 63,535 - -0.1
Or see this region's nucleotide sequence