Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18535 and AZOBR_RS18540 are separated by 102 nucleotides AZOBR_RS18540 and AZOBR_RS18545 are separated by 194 nucleotides AZOBR_RS18545 and AZOBR_RS18550 are separated by 19 nucleotides
AZOBR_RS18535: AZOBR_RS18535 - LysR family transcriptional regulator, at 927,352 to 928,260
_RS18535
AZOBR_RS18540: AZOBR_RS18540 - endoribonuclease L-PSP, at 928,363 to 928,761
_RS18540
AZOBR_RS18545: AZOBR_RS18545 - putative two-component response regulator:antitermination factor NasT, at 928,956 to 929,573
_RS18545
AZOBR_RS18550: AZOBR_RS18550 - ABC transporter for nitrate, ATPase component <small>(from data)</small>, at 929,593 to 931,257
_RS18550
Position (kb) 928
929 Strain fitness (log2 ratio) -2
-1
0
1
2 at 927.440 kb on + strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.536 kb on + strand, within AZOBR_RS18535 at 927.536 kb on + strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.653 kb on + strand, within AZOBR_RS18535 at 927.653 kb on + strand, within AZOBR_RS18535 at 928.324 kb on + strand at 928.325 kb on - strand at 928.325 kb on - strand at 928.423 kb on + strand, within AZOBR_RS18540 at 929.047 kb on + strand, within AZOBR_RS18545 at 929.660 kb on + strand at 929.661 kb on - strand at 929.664 kb on - strand at 929.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 927,440 + -1.4 927,441 - +1.0 927,441 - +0.6 927,441 - -0.4 927,441 - -0.6 927,536 + AZOBR_RS18535 0.20 -2.1 927,536 + AZOBR_RS18535 0.20 +0.2 927,537 - AZOBR_RS18535 0.20 -1.9 927,537 - AZOBR_RS18535 0.20 -1.0 927,537 - AZOBR_RS18535 0.20 -2.5 927,653 + AZOBR_RS18535 0.33 -0.8 927,653 + AZOBR_RS18535 0.33 +2.2 928,324 + -0.6 928,325 - +0.7 928,325 - +0.6 928,423 + AZOBR_RS18540 0.15 +1.4 929,047 + AZOBR_RS18545 0.15 -0.6 929,660 + -0.1 929,661 - +1.0 929,664 - -1.6 929,725 - +0.3
Or see this region's nucleotide sequence