Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17700 and AZOBR_RS17705 are separated by 848 nucleotides AZOBR_RS17705 and AZOBR_RS17710 are separated by 129 nucleotides AZOBR_RS17710 and AZOBR_RS17715 are separated by 297 nucleotides
AZOBR_RS17700: AZOBR_RS17700 - putative N-acetylmuramoyl-L-alanine amidase, at 731,882 to 734,587
_RS17700
AZOBR_RS17705: AZOBR_RS17705 - hypothetical protein, at 735,436 to 736,497
_RS17705
AZOBR_RS17710: AZOBR_RS17710 - hypothetical protein, at 736,627 to 736,974
_RS17710
AZOBR_RS17715: AZOBR_RS17715 - glycosyl transferase, at 737,272 to 738,327
_RS17715
Position (kb) 735
736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 734.948 kb on + strand at 734.948 kb on + strand at 734.949 kb on - strand at 734.949 kb on - strand at 735.094 kb on + strand at 735.095 kb on - strand at 735.258 kb on + strand at 735.259 kb on - strand at 736.022 kb on - strand, within AZOBR_RS17705 at 736.329 kb on - strand, within AZOBR_RS17705 at 736.786 kb on - strand, within AZOBR_RS17710 at 736.792 kb on + strand, within AZOBR_RS17710 at 736.817 kb on - strand, within AZOBR_RS17710 at 736.817 kb on - strand, within AZOBR_RS17710 at 736.842 kb on + strand, within AZOBR_RS17710 at 736.980 kb on + strand at 736.980 kb on + strand at 736.980 kb on + strand at 736.981 kb on - strand at 736.981 kb on - strand at 736.981 kb on - strand at 737.168 kb on + strand at 737.168 kb on + strand at 737.169 kb on - strand at 737.177 kb on - strand at 737.300 kb on - strand at 737.300 kb on - strand at 737.350 kb on + strand at 737.351 kb on - strand at 737.351 kb on - strand at 737.351 kb on - strand at 737.351 kb on - strand at 737.351 kb on - strand at 737.418 kb on + strand, within AZOBR_RS17715 at 737.419 kb on - strand, within AZOBR_RS17715 at 737.419 kb on - strand, within AZOBR_RS17715
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 734,948 + -1.9 734,948 + +1.4 734,949 - +0.7 734,949 - -0.7 735,094 + +0.4 735,095 - +0.2 735,258 + -0.3 735,259 - -0.9 736,022 - AZOBR_RS17705 0.55 +0.7 736,329 - AZOBR_RS17705 0.84 +1.9 736,786 - AZOBR_RS17710 0.46 +1.2 736,792 + AZOBR_RS17710 0.47 +1.4 736,817 - AZOBR_RS17710 0.55 -3.1 736,817 - AZOBR_RS17710 0.55 -0.8 736,842 + AZOBR_RS17710 0.62 -1.1 736,980 + -2.8 736,980 + +0.7 736,980 + -1.3 736,981 - -1.3 736,981 - -0.2 736,981 - -3.7 737,168 + -0.1 737,168 + +1.0 737,169 - +2.2 737,177 - -1.1 737,300 - -0.0 737,300 - +0.4 737,350 + -0.8 737,351 - +0.9 737,351 - -0.9 737,351 - +0.6 737,351 - -0.1 737,351 - -1.6 737,418 + AZOBR_RS17715 0.14 -1.3 737,419 - AZOBR_RS17715 0.14 -1.3 737,419 - AZOBR_RS17715 0.14 +1.2
Or see this region's nucleotide sequence