Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14370

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16670 and AZOBR_RS14370 are separated by 289 nucleotidesAZOBR_RS14370 and AZOBR_RS16675 are separated by 38 nucleotides AZOBR_RS16670: AZOBR_RS16670 - amino acid ABC transporter ATP-binding protein, at 496,623 to 497,399 _RS16670 AZOBR_RS14370: AZOBR_RS14370 - cobalamin, at 497,689 to 497,905 _RS14370 AZOBR_RS16675: AZOBR_RS16675 - CobW, at 497,944 to 499,011 _RS16675 Position (kb) 497 498Strain fitness (log2 ratio) -2 -1 0 1 2at 497.467 kb on + strandat 497.740 kb on + strand, within AZOBR_RS14370at 497.740 kb on + strand, within AZOBR_RS14370at 497.741 kb on - strand, within AZOBR_RS14370at 497.797 kb on + strand, within AZOBR_RS14370at 497.798 kb on - strand, within AZOBR_RS14370

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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497,467 + -2.5
497,740 + AZOBR_RS14370 0.24 +0.2
497,740 + AZOBR_RS14370 0.24 -1.0
497,741 - AZOBR_RS14370 0.24 +2.3
497,797 + AZOBR_RS14370 0.50 +0.5
497,798 - AZOBR_RS14370 0.50 -0.1

Or see this region's nucleotide sequence