Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS07580 and AZOBR_RS07585 are separated by 270 nucleotides AZOBR_RS07585 and AZOBR_RS07590 are separated by 155 nucleotides AZOBR_RS07590 and AZOBR_RS07595 are separated by 318 nucleotides
AZOBR_RS07580: AZOBR_RS07580 - membrane protein, at 1,594,646 to 1,594,870
_RS07580
AZOBR_RS07585: AZOBR_RS07585 - peroxiredoxin, at 1,595,141 to 1,595,671
_RS07585
AZOBR_RS07590: AZOBR_RS07590 - histidine ammonia-lyase, at 1,595,827 to 1,597,308
_RS07590
AZOBR_RS07595: AZOBR_RS07595 - ABC transporter ATP-binding protein, at 1,597,627 to 1,599,243
_RS07595
Position (kb) 1595
1596
1597
1598 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1594.886 kb on + strand at 1594.886 kb on + strand at 1594.886 kb on + strand at 1594.887 kb on - strand at 1595.436 kb on + strand, within AZOBR_RS07585 at 1595.436 kb on + strand, within AZOBR_RS07585 at 1595.436 kb on + strand, within AZOBR_RS07585 at 1595.437 kb on - strand, within AZOBR_RS07585 at 1595.437 kb on - strand, within AZOBR_RS07585 at 1595.437 kb on - strand, within AZOBR_RS07585 at 1595.472 kb on + strand, within AZOBR_RS07585 at 1595.705 kb on + strand at 1595.705 kb on + strand at 1595.723 kb on - strand at 1596.926 kb on + strand, within AZOBR_RS07590 at 1596.926 kb on + strand, within AZOBR_RS07590 at 1596.927 kb on - strand, within AZOBR_RS07590 at 1597.145 kb on + strand, within AZOBR_RS07590 at 1597.146 kb on - strand, within AZOBR_RS07590 at 1597.951 kb on + strand, within AZOBR_RS07595 at 1597.951 kb on + strand, within AZOBR_RS07595 at 1597.952 kb on - strand, within AZOBR_RS07595 at 1597.966 kb on + strand, within AZOBR_RS07595 at 1597.966 kb on + strand, within AZOBR_RS07595 at 1597.967 kb on - strand, within AZOBR_RS07595 at 1597.967 kb on - strand, within AZOBR_RS07595 at 1597.967 kb on - strand, within AZOBR_RS07595 at 1598.032 kb on + strand, within AZOBR_RS07595 at 1598.032 kb on + strand, within AZOBR_RS07595
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,594,886 + -1.4 1,594,886 + -0.3 1,594,886 + -1.4 1,594,887 - +1.4 1,595,436 + AZOBR_RS07585 0.56 -2.1 1,595,436 + AZOBR_RS07585 0.56 -1.7 1,595,436 + AZOBR_RS07585 0.56 -2.4 1,595,437 - AZOBR_RS07585 0.56 +0.4 1,595,437 - AZOBR_RS07585 0.56 +0.3 1,595,437 - AZOBR_RS07585 0.56 -0.9 1,595,472 + AZOBR_RS07585 0.62 -0.2 1,595,705 + -1.6 1,595,705 + -0.9 1,595,723 - -0.3 1,596,926 + AZOBR_RS07590 0.74 -2.7 1,596,926 + AZOBR_RS07590 0.74 -1.4 1,596,927 - AZOBR_RS07590 0.74 +0.2 1,597,145 + AZOBR_RS07590 0.89 -0.4 1,597,146 - AZOBR_RS07590 0.89 -3.1 1,597,951 + AZOBR_RS07595 0.20 +0.8 1,597,951 + AZOBR_RS07595 0.20 -1.7 1,597,952 - AZOBR_RS07595 0.20 +0.7 1,597,966 + AZOBR_RS07595 0.21 +0.9 1,597,966 + AZOBR_RS07595 0.21 +1.2 1,597,967 - AZOBR_RS07595 0.21 +1.1 1,597,967 - AZOBR_RS07595 0.21 +0.7 1,597,967 - AZOBR_RS07595 0.21 +1.1 1,598,032 + AZOBR_RS07595 0.25 -0.1 1,598,032 + AZOBR_RS07595 0.25 +1.7
Or see this region's nucleotide sequence