Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05080

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05075 and AZOBR_RS05080 are separated by 207 nucleotidesAZOBR_RS05080 and AZOBR_RS05085 are separated by 268 nucleotides AZOBR_RS05075: AZOBR_RS05075 - isoleucyl-tRNA synthetase, at 1,075,789 to 1,078,644 _RS05075 AZOBR_RS05080: AZOBR_RS05080 - orotate phosphoribosyltransferase, at 1,078,852 to 1,079,544 _RS05080 AZOBR_RS05085: AZOBR_RS05085 - riboflavin kinase, at 1,079,813 to 1,080,769 _RS05085 Position (kb) 1078 1079 1080Strain fitness (log2 ratio) -2 -1 0 1at 1078.946 kb on + strandat 1079.231 kb on + strand, within AZOBR_RS05080at 1079.232 kb on - strand, within AZOBR_RS05080at 1079.232 kb on - strand, within AZOBR_RS05080at 1079.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,078,946 + -1.8
1,079,231 + AZOBR_RS05080 0.55 -2.6
1,079,232 - AZOBR_RS05080 0.55 -1.4
1,079,232 - AZOBR_RS05080 0.55 -2.0
1,079,550 - -1.0

Or see this region's nucleotide sequence