Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03225

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03220 and AZOBR_RS03225 are separated by 91 nucleotides AZOBR_RS03220: AZOBR_RS03220 - 3-dehydroquinate synthase, at 683,491 to 684,627 _RS03220 AZOBR_RS03225: AZOBR_RS03225 - shikimate kinase, at 684,719 to 685,207 _RS03225 Position (kb) 684 685 686Strain fitness (log2 ratio) -2 -1 0 1 2at 685.389 kb on - strandat 685.389 kb on - strandat 685.389 kb on - strandat 685.442 kb on + strandat 685.492 kb on - strandat 685.831 kb on - strandat 685.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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685,389 - -1.1
685,389 - +0.3
685,389 - -2.2
685,442 + +0.6
685,492 - -1.7
685,831 - +2.3
685,998 - -1.2

Or see this region's nucleotide sequence