Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02805 and AZOBR_RS02810 are separated by 741 nucleotides AZOBR_RS02810 and AZOBR_RS02815 are separated by 735 nucleotides
AZOBR_RS02805: AZOBR_RS02805 - hypothetical protein, at 595,133 to 595,927
_RS02805
AZOBR_RS02810: AZOBR_RS02810 - hypothetical protein, at 596,669 to 596,974
_RS02810
AZOBR_RS02815: AZOBR_RS02815 - hypothetical protein, at 597,710 to 597,889
_RS02815
Position (kb) 596
597 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 595.910 kb on + strand at 596.049 kb on - strand at 596.545 kb on + strand at 596.545 kb on + strand at 596.608 kb on + strand at 596.608 kb on + strand at 596.608 kb on + strand at 596.608 kb on + strand at 596.820 kb on - strand, within AZOBR_RS02810 at 596.934 kb on + strand, within AZOBR_RS02810 at 596.934 kb on + strand, within AZOBR_RS02810 at 596.935 kb on - strand, within AZOBR_RS02810 at 596.935 kb on - strand, within AZOBR_RS02810 at 596.935 kb on - strand, within AZOBR_RS02810 at 596.935 kb on - strand, within AZOBR_RS02810 at 596.935 kb on - strand, within AZOBR_RS02810 at 597.019 kb on + strand at 597.019 kb on + strand at 597.019 kb on + strand at 597.020 kb on - strand at 597.020 kb on - strand at 597.020 kb on - strand at 597.020 kb on - strand at 597.158 kb on + strand at 597.287 kb on + strand at 597.287 kb on + strand at 597.539 kb on - strand at 597.592 kb on - strand at 597.608 kb on + strand at 597.664 kb on + strand at 597.749 kb on + strand at 597.763 kb on + strand, within AZOBR_RS02815 at 597.764 kb on - strand, within AZOBR_RS02815 at 597.764 kb on - strand, within AZOBR_RS02815 at 597.764 kb on - strand, within AZOBR_RS02815 at 597.782 kb on + strand, within AZOBR_RS02815 at 597.889 kb on + strand at 597.890 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 595,910 + -0.6 596,049 - +3.3 596,545 + +1.1 596,545 + +0.8 596,608 + +0.1 596,608 + +0.8 596,608 + -1.0 596,608 + -0.2 596,820 - AZOBR_RS02810 0.49 -2.3 596,934 + AZOBR_RS02810 0.87 -0.7 596,934 + AZOBR_RS02810 0.87 +0.3 596,935 - AZOBR_RS02810 0.87 +0.0 596,935 - AZOBR_RS02810 0.87 +1.9 596,935 - AZOBR_RS02810 0.87 +1.7 596,935 - AZOBR_RS02810 0.87 +1.9 596,935 - AZOBR_RS02810 0.87 +1.5 597,019 + -0.9 597,019 + -0.8 597,019 + -1.1 597,020 - -1.7 597,020 - -0.0 597,020 - -0.4 597,020 - +0.6 597,158 + +0.3 597,287 + -0.0 597,287 + +1.0 597,539 - +2.3 597,592 - +2.3 597,608 + +1.3 597,664 + -4.9 597,749 + +2.3 597,763 + AZOBR_RS02815 0.29 -4.8 597,764 - AZOBR_RS02815 0.30 -3.6 597,764 - AZOBR_RS02815 0.30 +1.3 597,764 - AZOBR_RS02815 0.30 +2.3 597,782 + AZOBR_RS02815 0.40 -1.0 597,889 + +0.3 597,890 - -6.4
Or see this region's nucleotide sequence