Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02485 and AZOBR_RS02490 are separated by 139 nucleotides AZOBR_RS02490 and AZOBR_RS02495 are separated by 294 nucleotides AZOBR_RS02495 and AZOBR_RS02500 are separated by 52 nucleotides
AZOBR_RS02485: AZOBR_RS02485 - muraminidase, at 518,701 to 519,192
_RS02485
AZOBR_RS02490: AZOBR_RS02490 - conserved protein of unknown function (Usg-like), at 519,332 to 519,595
_RS02490
AZOBR_RS02495: AZOBR_RS02495 - molecular chaperone GroES, at 519,890 to 520,180
_RS02495
AZOBR_RS02500: AZOBR_RS02500 - molecular chaperone GroEL, at 520,233 to 521,876
_RS02500
Position (kb) 519
520 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 518.565 kb on - strand at 518.636 kb on + strand at 518.636 kb on + strand at 518.636 kb on + strand at 518.636 kb on + strand at 518.636 kb on + strand at 518.637 kb on - strand at 518.637 kb on - strand at 518.637 kb on - strand at 518.637 kb on - strand at 518.637 kb on - strand at 518.831 kb on + strand, within AZOBR_RS02485 at 518.867 kb on + strand, within AZOBR_RS02485 at 518.867 kb on + strand, within AZOBR_RS02485 at 519.025 kb on + strand, within AZOBR_RS02485 at 519.122 kb on + strand, within AZOBR_RS02485 at 519.122 kb on + strand, within AZOBR_RS02485 at 519.122 kb on + strand, within AZOBR_RS02485 at 519.123 kb on - strand, within AZOBR_RS02485 at 519.123 kb on - strand, within AZOBR_RS02485 at 519.134 kb on + strand, within AZOBR_RS02485 at 519.135 kb on - strand, within AZOBR_RS02485 at 519.501 kb on + strand, within AZOBR_RS02490 at 519.501 kb on + strand, within AZOBR_RS02490 at 519.502 kb on - strand, within AZOBR_RS02490
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 518,565 - -0.7 518,636 + +0.9 518,636 + +0.0 518,636 + -0.2 518,636 + +2.6 518,636 + +0.1 518,637 - +0.3 518,637 - +0.3 518,637 - -1.7 518,637 - -0.0 518,637 - -1.4 518,831 + AZOBR_RS02485 0.26 +0.1 518,867 + AZOBR_RS02485 0.34 +1.0 518,867 + AZOBR_RS02485 0.34 +0.8 519,025 + AZOBR_RS02485 0.66 -2.2 519,122 + AZOBR_RS02485 0.86 +1.3 519,122 + AZOBR_RS02485 0.86 +0.9 519,122 + AZOBR_RS02485 0.86 -0.4 519,123 - AZOBR_RS02485 0.86 +1.3 519,123 - AZOBR_RS02485 0.86 +1.3 519,134 + AZOBR_RS02485 0.88 -0.7 519,135 - AZOBR_RS02485 0.88 +0.5 519,501 + AZOBR_RS02490 0.64 +3.1 519,501 + AZOBR_RS02490 0.64 +0.6 519,502 - AZOBR_RS02490 0.64 +2.7
Or see this region's nucleotide sequence