Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01775

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01765 and AZOBR_RS01770 are separated by 9 nucleotidesAZOBR_RS01770 and AZOBR_RS01775 overlap by 8 nucleotidesAZOBR_RS01775 and AZOBR_RS01780 are separated by 41 nucleotides AZOBR_RS01765: AZOBR_RS01765 - shikimate 5-dehydrogenase, at 359,639 to 360,478 _RS01765 AZOBR_RS01770: AZOBR_RS01770 - dephospho-CoA kinase, at 360,488 to 361,132 _RS01770 AZOBR_RS01775: AZOBR_RS01775 - DNA polymerase III subunit epsilon, at 361,125 to 361,802 _RS01775 AZOBR_RS01780: AZOBR_RS01780 - quinone oxidoreductase, at 361,844 to 362,818 _RS01780 Position (kb) 361 362Strain fitness (log2 ratio) -2 -1 0 1 2 3at 361.103 kb on + strandat 361.103 kb on + strandat 361.248 kb on + strand, within AZOBR_RS01775at 361.249 kb on - strand, within AZOBR_RS01775at 361.569 kb on + strand, within AZOBR_RS01775at 361.612 kb on - strand, within AZOBR_RS01775at 361.612 kb on - strand, within AZOBR_RS01775at 361.612 kb on - strand, within AZOBR_RS01775at 361.612 kb on - strand, within AZOBR_RS01775at 361.957 kb on + strand, within AZOBR_RS01780at 361.957 kb on + strand, within AZOBR_RS01780at 361.958 kb on - strand, within AZOBR_RS01780at 362.016 kb on + strand, within AZOBR_RS01780at 362.016 kb on + strand, within AZOBR_RS01780at 362.017 kb on - strand, within AZOBR_RS01780at 362.017 kb on - strand, within AZOBR_RS01780at 362.043 kb on + strand, within AZOBR_RS01780at 362.043 kb on + strand, within AZOBR_RS01780at 362.044 kb on - strand, within AZOBR_RS01780at 362.044 kb on - strand, within AZOBR_RS01780at 362.044 kb on - strand, within AZOBR_RS01780at 362.044 kb on - strand, within AZOBR_RS01780at 362.119 kb on + strand, within AZOBR_RS01780at 362.119 kb on + strandat 362.181 kb on + strand, within AZOBR_RS01780at 362.182 kb on - strand, within AZOBR_RS01780at 362.182 kb on - strand, within AZOBR_RS01780at 362.247 kb on + strand, within AZOBR_RS01780at 362.248 kb on - strand, within AZOBR_RS01780at 362.415 kb on + strand, within AZOBR_RS01780at 362.416 kb on - strand, within AZOBR_RS01780at 362.416 kb on - strand, within AZOBR_RS01780at 362.416 kb on - strand, within AZOBR_RS01780at 362.416 kb on - strand, within AZOBR_RS01780at 362.416 kb on - strand, within AZOBR_RS01780at 362.416 kb on - strand, within AZOBR_RS01780at 362.538 kb on + strand, within AZOBR_RS01780at 362.559 kb on + strand, within AZOBR_RS01780at 362.560 kb on - strand, within AZOBR_RS01780at 362.664 kb on + strand, within AZOBR_RS01780at 362.664 kb on + strand, within AZOBR_RS01780at 362.665 kb on - strand, within AZOBR_RS01780at 362.665 kb on - strand, within AZOBR_RS01780at 362.682 kb on + strand, within AZOBR_RS01780at 362.682 kb on + strand, within AZOBR_RS01780at 362.682 kb on + strand, within AZOBR_RS01780at 362.683 kb on - strand, within AZOBR_RS01780at 362.683 kb on - strand, within AZOBR_RS01780at 362.683 kb on - strand, within AZOBR_RS01780at 362.683 kb on - strand, within AZOBR_RS01780at 362.683 kb on - strand, within AZOBR_RS01780at 362.683 kb on - strand, within AZOBR_RS01780at 362.694 kb on + strand, within AZOBR_RS01780at 362.694 kb on + strand, within AZOBR_RS01780at 362.694 kb on + strand, within AZOBR_RS01780at 362.694 kb on + strand, within AZOBR_RS01780at 362.694 kb on + strand, within AZOBR_RS01780at 362.695 kb on - strand, within AZOBR_RS01780at 362.695 kb on - strand, within AZOBR_RS01780at 362.695 kb on - strand, within AZOBR_RS01780at 362.695 kb on - strand, within AZOBR_RS01780at 362.790 kb on + strandat 362.790 kb on + strandat 362.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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361,103 + -1.0
361,103 + +0.8
361,248 + AZOBR_RS01775 0.18 +0.4
361,249 - AZOBR_RS01775 0.18 -0.8
361,569 + AZOBR_RS01775 0.65 -0.4
361,612 - AZOBR_RS01775 0.72 +0.6
361,612 - AZOBR_RS01775 0.72 -1.1
361,612 - AZOBR_RS01775 0.72 -1.2
361,612 - AZOBR_RS01775 0.72 -2.1
361,957 + AZOBR_RS01780 0.12 +0.2
361,957 + AZOBR_RS01780 0.12 -0.0
361,958 - AZOBR_RS01780 0.12 -0.6
362,016 + AZOBR_RS01780 0.18 -2.1
362,016 + AZOBR_RS01780 0.18 -2.0
362,017 - AZOBR_RS01780 0.18 -1.5
362,017 - AZOBR_RS01780 0.18 +0.3
362,043 + AZOBR_RS01780 0.20 +2.0
362,043 + AZOBR_RS01780 0.20 -0.2
362,044 - AZOBR_RS01780 0.21 -1.6
362,044 - AZOBR_RS01780 0.21 +1.6
362,044 - AZOBR_RS01780 0.21 +0.2
362,044 - AZOBR_RS01780 0.21 -0.2
362,119 + AZOBR_RS01780 0.28 +0.8
362,119 + +2.9
362,181 + AZOBR_RS01780 0.35 -0.8
362,182 - AZOBR_RS01780 0.35 +1.5
362,182 - AZOBR_RS01780 0.35 +1.4
362,247 + AZOBR_RS01780 0.41 +0.8
362,248 - AZOBR_RS01780 0.41 +0.9
362,415 + AZOBR_RS01780 0.59 -1.0
362,416 - AZOBR_RS01780 0.59 -0.7
362,416 - AZOBR_RS01780 0.59 +1.4
362,416 - AZOBR_RS01780 0.59 +0.0
362,416 - AZOBR_RS01780 0.59 +0.5
362,416 - AZOBR_RS01780 0.59 -1.3
362,416 - AZOBR_RS01780 0.59 -0.2
362,538 + AZOBR_RS01780 0.71 -0.0
362,559 + AZOBR_RS01780 0.73 -1.6
362,560 - AZOBR_RS01780 0.73 +0.6
362,664 + AZOBR_RS01780 0.84 +1.0
362,664 + AZOBR_RS01780 0.84 +0.1
362,665 - AZOBR_RS01780 0.84 +0.0
362,665 - AZOBR_RS01780 0.84 +2.0
362,682 + AZOBR_RS01780 0.86 -0.6
362,682 + AZOBR_RS01780 0.86 -0.2
362,682 + AZOBR_RS01780 0.86 +1.1
362,683 - AZOBR_RS01780 0.86 +0.0
362,683 - AZOBR_RS01780 0.86 +0.8
362,683 - AZOBR_RS01780 0.86 -0.0
362,683 - AZOBR_RS01780 0.86 +0.5
362,683 - AZOBR_RS01780 0.86 +0.7
362,683 - AZOBR_RS01780 0.86 +2.4
362,694 + AZOBR_RS01780 0.87 +0.6
362,694 + AZOBR_RS01780 0.87 -0.0
362,694 + AZOBR_RS01780 0.87 -1.5
362,694 + AZOBR_RS01780 0.87 +0.2
362,694 + AZOBR_RS01780 0.87 -1.1
362,695 - AZOBR_RS01780 0.87 -1.2
362,695 - AZOBR_RS01780 0.87 -0.5
362,695 - AZOBR_RS01780 0.87 +0.2
362,695 - AZOBR_RS01780 0.87 +0.4
362,790 + -0.7
362,790 + +1.7
362,791 - -1.3

Or see this region's nucleotide sequence