Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01350

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01340 and AZOBR_RS01345 are separated by 199 nucleotidesAZOBR_RS01345 and AZOBR_RS01350 are separated by 137 nucleotidesAZOBR_RS01350 and AZOBR_RS01355 are separated by 229 nucleotides AZOBR_RS01340: AZOBR_RS01340 - rubrerythrin, at 278,923 to 279,342 _RS01340 AZOBR_RS01345: AZOBR_RS01345 - Fur family transcriptional regulator, at 279,542 to 279,973 _RS01345 AZOBR_RS01350: AZOBR_RS01350 - 2-nitropropane dioxygenase, at 280,111 to 281,508 _RS01350 AZOBR_RS01355: AZOBR_RS01355 - glycerophosphoryl diester phosphodiesterase, at 281,738 to 282,487 _RS01355 Position (kb) 280 281 282Strain fitness (log2 ratio) -1 0 1 2 3at 279.260 kb on + strand, within AZOBR_RS01340at 279.261 kb on - strand, within AZOBR_RS01340at 279.261 kb on - strand, within AZOBR_RS01340at 279.267 kb on - strand, within AZOBR_RS01340at 279.267 kb on - strand, within AZOBR_RS01340at 279.720 kb on + strand, within AZOBR_RS01345at 279.790 kb on - strand, within AZOBR_RS01345at 281.854 kb on - strand, within AZOBR_RS01355at 281.854 kb on - strand, within AZOBR_RS01355at 281.992 kb on - strand, within AZOBR_RS01355at 281.992 kb on - strand, within AZOBR_RS01355at 282.502 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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279,260 + AZOBR_RS01340 0.80 +1.0
279,261 - AZOBR_RS01340 0.80 +0.3
279,261 - AZOBR_RS01340 0.80 -0.9
279,267 - AZOBR_RS01340 0.82 +1.4
279,267 - AZOBR_RS01340 0.82 +1.6
279,720 + AZOBR_RS01345 0.41 +2.6
279,790 - AZOBR_RS01345 0.57 +2.8
281,854 - AZOBR_RS01355 0.15 +2.4
281,854 - AZOBR_RS01355 0.15 +0.5
281,992 - AZOBR_RS01355 0.34 +0.3
281,992 - AZOBR_RS01355 0.34 +1.0
282,502 + -1.3

Or see this region's nucleotide sequence