Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01195

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01190 and AZOBR_RS01195 are separated by 75 nucleotidesAZOBR_RS01195 and AZOBR_RS01200 are separated by 71 nucleotides AZOBR_RS01190: AZOBR_RS01190 - SAM-dependent methyltransferase, at 244,766 to 245,974 _RS01190 AZOBR_RS01195: AZOBR_RS01195 - RNA methyltransferase, at 246,050 to 247,315 _RS01195 AZOBR_RS01200: AZOBR_RS01200 - copper oxidase, at 247,387 to 248,715 _RS01200 Position (kb) 246 247 248Strain fitness (log2 ratio) -2 -1 0 1at 245.090 kb on + strand, within AZOBR_RS01190at 245.091 kb on - strand, within AZOBR_RS01190at 245.402 kb on + strand, within AZOBR_RS01190at 245.403 kb on - strand, within AZOBR_RS01190at 245.403 kb on - strand, within AZOBR_RS01190at 245.474 kb on + strand, within AZOBR_RS01190at 245.474 kb on + strand, within AZOBR_RS01190at 245.474 kb on + strand, within AZOBR_RS01190at 245.475 kb on - strand, within AZOBR_RS01190at 245.475 kb on - strand, within AZOBR_RS01190at 245.942 kb on + strandat 245.943 kb on - strandat 245.947 kb on + strandat 246.051 kb on + strandat 246.133 kb on - strandat 246.133 kb on - strandat 247.063 kb on - strand, within AZOBR_RS01195at 247.078 kb on + strand, within AZOBR_RS01195at 247.892 kb on + strand, within AZOBR_RS01200at 247.892 kb on + strand, within AZOBR_RS01200at 247.928 kb on + strand, within AZOBR_RS01200

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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245,090 + AZOBR_RS01190 0.27 -1.3
245,091 - AZOBR_RS01190 0.27 +0.2
245,402 + AZOBR_RS01190 0.53 +0.9
245,403 - AZOBR_RS01190 0.53 -1.2
245,403 - AZOBR_RS01190 0.53 +1.1
245,474 + AZOBR_RS01190 0.59 +0.8
245,474 + AZOBR_RS01190 0.59 -2.1
245,474 + AZOBR_RS01190 0.59 -0.3
245,475 - AZOBR_RS01190 0.59 -0.8
245,475 - AZOBR_RS01190 0.59 -0.8
245,942 + -0.8
245,943 - +1.1
245,947 + -0.2
246,051 + +0.6
246,133 - -0.1
246,133 - -1.5
247,063 - AZOBR_RS01195 0.80 -1.1
247,078 + AZOBR_RS01195 0.81 -0.2
247,892 + AZOBR_RS01200 0.38 +0.1
247,892 + AZOBR_RS01200 0.38 -1.9
247,928 + AZOBR_RS01200 0.41 -1.5

Or see this region's nucleotide sequence