Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20440

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20435 and ABZR87_RS20440 are separated by 270 nucleotidesABZR87_RS20440 and ABZR87_RS20445 are separated by 239 nucleotides ABZR87_RS20435: ABZR87_RS20435 - TonB-dependent receptor, at 971,825 to 973,795 _RS20435 ABZR87_RS20440: ABZR87_RS20440 - F0F1 ATP synthase subunit epsilon, at 974,066 to 974,485 _RS20440 ABZR87_RS20445: ABZR87_RS20445 - LysR substrate-binding domain-containing protein, at 974,725 to 975,660 _RS20445 Position (kb) 974 975Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 973.101 kb on + strand, within ABZR87_RS20435at 973.155 kb on + strand, within ABZR87_RS20435at 973.350 kb on + strand, within ABZR87_RS20435at 973.377 kb on + strand, within ABZR87_RS20435at 973.378 kb on - strand, within ABZR87_RS20435at 973.536 kb on + strand, within ABZR87_RS20435at 973.548 kb on + strand, within ABZR87_RS20435at 973.549 kb on - strand, within ABZR87_RS20435at 973.549 kb on - strand, within ABZR87_RS20435at 973.549 kb on - strand, within ABZR87_RS20435at 973.549 kb on - strand, within ABZR87_RS20435at 973.557 kb on + strand, within ABZR87_RS20435at 973.557 kb on + strand, within ABZR87_RS20435at 973.557 kb on + strand, within ABZR87_RS20435at 973.557 kb on + strand, within ABZR87_RS20435at 973.557 kb on + strand, within ABZR87_RS20435at 973.558 kb on - strand, within ABZR87_RS20435at 973.558 kb on - strand, within ABZR87_RS20435at 973.605 kb on + strandat 973.605 kb on + strandat 973.605 kb on + strandat 973.671 kb on + strandat 973.671 kb on + strandat 973.671 kb on + strandat 973.671 kb on + strandat 973.672 kb on - strandat 973.672 kb on - strandat 973.980 kb on + strandat 973.981 kb on - strandat 973.992 kb on - strandat 974.440 kb on - strand, within ABZR87_RS20440at 974.509 kb on - strandat 974.509 kb on - strandat 974.509 kb on - strandat 974.638 kb on + strandat 974.638 kb on + strandat 974.655 kb on + strandat 974.655 kb on + strandat 974.656 kb on - strandat 974.656 kb on - strandat 974.656 kb on - strandat 974.656 kb on - strandat 974.674 kb on + strandat 974.674 kb on + strandat 974.674 kb on + strandat 974.674 kb on + strandat 974.675 kb on - strandat 974.738 kb on + strandat 974.738 kb on + strandat 974.738 kb on + strandat 974.738 kb on + strandat 974.738 kb on + strandat 974.738 kb on + strandat 974.738 kb on + strandat 974.739 kb on - strandat 974.739 kb on - strandat 974.739 kb on - strandat 974.739 kb on - strandat 974.739 kb on - strandat 974.739 kb on - strandat 974.851 kb on + strand, within ABZR87_RS20445at 974.851 kb on + strand, within ABZR87_RS20445at 974.851 kb on + strand, within ABZR87_RS20445at 974.852 kb on - strand, within ABZR87_RS20445at 974.852 kb on - strand, within ABZR87_RS20445at 974.852 kb on - strand, within ABZR87_RS20445at 974.852 kb on - strand, within ABZR87_RS20445at 974.852 kb on - strand, within ABZR87_RS20445at 975.025 kb on + strand, within ABZR87_RS20445at 975.025 kb on + strand, within ABZR87_RS20445at 975.025 kb on + strand, within ABZR87_RS20445at 975.026 kb on - strand, within ABZR87_RS20445at 975.026 kb on - strand, within ABZR87_RS20445at 975.026 kb on - strand, within ABZR87_RS20445at 975.026 kb on - strand, within ABZR87_RS20445at 975.028 kb on + strand, within ABZR87_RS20445at 975.028 kb on + strand, within ABZR87_RS20445at 975.028 kb on + strand, within ABZR87_RS20445at 975.028 kb on + strand, within ABZR87_RS20445at 975.028 kb on + strand, within ABZR87_RS20445at 975.028 kb on + strand, within ABZR87_RS20445at 975.028 kb on + strand, within ABZR87_RS20445at 975.029 kb on - strand, within ABZR87_RS20445at 975.029 kb on - strand, within ABZR87_RS20445at 975.259 kb on - strand, within ABZR87_RS20445at 975.397 kb on + strand, within ABZR87_RS20445at 975.397 kb on + strand, within ABZR87_RS20445

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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973,101 + ABZR87_RS20435 0.65 +0.2
973,155 + ABZR87_RS20435 0.67 -0.5
973,350 + ABZR87_RS20435 0.77 -2.2
973,377 + ABZR87_RS20435 0.79 +0.1
973,378 - ABZR87_RS20435 0.79 +0.4
973,536 + ABZR87_RS20435 0.87 -0.1
973,548 + ABZR87_RS20435 0.87 +0.4
973,549 - ABZR87_RS20435 0.87 +1.3
973,549 - ABZR87_RS20435 0.87 -0.8
973,549 - ABZR87_RS20435 0.87 +0.8
973,549 - ABZR87_RS20435 0.87 +0.2
973,557 + ABZR87_RS20435 0.88 +0.7
973,557 + ABZR87_RS20435 0.88 +0.5
973,557 + ABZR87_RS20435 0.88 -0.6
973,557 + ABZR87_RS20435 0.88 +0.0
973,557 + ABZR87_RS20435 0.88 -0.6
973,558 - ABZR87_RS20435 0.88 -0.4
973,558 - ABZR87_RS20435 0.88 +0.8
973,605 + -0.8
973,605 + +1.8
973,605 + +0.3
973,671 + -0.7
973,671 + +0.0
973,671 + +1.3
973,671 + +0.9
973,672 - +0.3
973,672 - -0.3
973,980 + +1.5
973,981 - -0.1
973,992 - +0.3
974,440 - ABZR87_RS20440 0.89 -0.4
974,509 - -3.7
974,509 - -0.3
974,509 - +0.4
974,638 + +1.0
974,638 + -0.0
974,655 + -0.2
974,655 + +0.2
974,656 - +1.6
974,656 - -0.5
974,656 - +0.0
974,656 - +0.2
974,674 + +1.0
974,674 + -0.8
974,674 + -0.2
974,674 + +0.2
974,675 - -0.1
974,738 + +1.1
974,738 + -0.3
974,738 + -0.1
974,738 + +1.0
974,738 + +0.3
974,738 + +0.2
974,738 + +0.3
974,739 - -0.2
974,739 - +0.7
974,739 - +0.3
974,739 - -0.5
974,739 - +0.6
974,739 - -0.3
974,851 + ABZR87_RS20445 0.13 +2.4
974,851 + ABZR87_RS20445 0.13 +0.5
974,851 + ABZR87_RS20445 0.13 +0.4
974,852 - ABZR87_RS20445 0.14 +1.7
974,852 - ABZR87_RS20445 0.14 +0.3
974,852 - ABZR87_RS20445 0.14 -1.3
974,852 - ABZR87_RS20445 0.14 -1.0
974,852 - ABZR87_RS20445 0.14 +1.2
975,025 + ABZR87_RS20445 0.32 -1.3
975,025 + ABZR87_RS20445 0.32 -0.8
975,025 + ABZR87_RS20445 0.32 -1.0
975,026 - ABZR87_RS20445 0.32 -0.9
975,026 - ABZR87_RS20445 0.32 -3.0
975,026 - ABZR87_RS20445 0.32 +0.8
975,026 - ABZR87_RS20445 0.32 -0.5
975,028 + ABZR87_RS20445 0.32 -0.2
975,028 + ABZR87_RS20445 0.32 -1.1
975,028 + ABZR87_RS20445 0.32 +0.6
975,028 + ABZR87_RS20445 0.32 -0.1
975,028 + ABZR87_RS20445 0.32 -3.0
975,028 + ABZR87_RS20445 0.32 -0.3
975,028 + ABZR87_RS20445 0.32 +1.7
975,029 - ABZR87_RS20445 0.32 +0.5
975,029 - ABZR87_RS20445 0.32 +0.1
975,259 - ABZR87_RS20445 0.57 +2.8
975,397 + ABZR87_RS20445 0.72 +0.4
975,397 + ABZR87_RS20445 0.72 +0.2

Or see this region's nucleotide sequence