Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19800

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19795 and ABZR87_RS19800 are separated by 80 nucleotidesABZR87_RS19800 and ABZR87_RS19805 are separated by 81 nucleotides ABZR87_RS19795: ABZR87_RS19795 - gamma-glutamyltransferase, at 812,777 to 814,486 _RS19795 ABZR87_RS19800: ABZR87_RS19800 - VOC family protein, at 814,567 to 815,640 _RS19800 ABZR87_RS19805: ABZR87_RS19805 - MFS transporter, at 815,722 to 816,912 _RS19805 Position (kb) 814 815 816Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 813.569 kb on + strand, within ABZR87_RS19795at 813.569 kb on + strand, within ABZR87_RS19795at 813.570 kb on - strand, within ABZR87_RS19795at 813.570 kb on - strand, within ABZR87_RS19795at 813.690 kb on - strand, within ABZR87_RS19795at 813.716 kb on + strand, within ABZR87_RS19795at 813.716 kb on + strand, within ABZR87_RS19795at 813.716 kb on + strand, within ABZR87_RS19795at 813.717 kb on - strand, within ABZR87_RS19795at 813.717 kb on - strand, within ABZR87_RS19795at 813.717 kb on - strand, within ABZR87_RS19795at 813.717 kb on - strand, within ABZR87_RS19795at 813.734 kb on + strand, within ABZR87_RS19795at 813.734 kb on + strand, within ABZR87_RS19795at 813.735 kb on - strand, within ABZR87_RS19795at 813.735 kb on - strand, within ABZR87_RS19795at 813.735 kb on - strand, within ABZR87_RS19795at 813.791 kb on + strand, within ABZR87_RS19795at 813.792 kb on - strand, within ABZR87_RS19795at 813.894 kb on - strand, within ABZR87_RS19795at 813.911 kb on + strand, within ABZR87_RS19795at 813.911 kb on + strand, within ABZR87_RS19795at 813.935 kb on + strand, within ABZR87_RS19795at 813.935 kb on + strand, within ABZR87_RS19795at 813.935 kb on + strand, within ABZR87_RS19795at 814.044 kb on - strand, within ABZR87_RS19795at 814.215 kb on - strand, within ABZR87_RS19795at 814.215 kb on - strand, within ABZR87_RS19795at 814.215 kb on - strand, within ABZR87_RS19795at 814.296 kb on - strand, within ABZR87_RS19795at 814.437 kb on - strandat 814.482 kb on - strandat 814.482 kb on - strandat 814.731 kb on - strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.791 kb on - strand, within ABZR87_RS19800at 814.791 kb on - strand, within ABZR87_RS19800at 814.793 kb on + strand, within ABZR87_RS19800at 814.794 kb on - strand, within ABZR87_RS19800at 814.794 kb on - strand, within ABZR87_RS19800at 814.952 kb on + strand, within ABZR87_RS19800at 814.952 kb on + strand, within ABZR87_RS19800at 814.953 kb on - strand, within ABZR87_RS19800at 815.064 kb on - strand, within ABZR87_RS19800at 815.064 kb on - strand, within ABZR87_RS19800at 815.198 kb on + strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.271 kb on + strand, within ABZR87_RS19800at 815.367 kb on - strand, within ABZR87_RS19800at 815.420 kb on + strand, within ABZR87_RS19800at 815.420 kb on + strand, within ABZR87_RS19800at 815.420 kb on + strand, within ABZR87_RS19800at 815.420 kb on + strand, within ABZR87_RS19800at 815.551 kb on + strandat 815.551 kb on + strandat 815.551 kb on + strandat 815.552 kb on - strandat 815.552 kb on - strandat 815.580 kb on + strandat 815.581 kb on - strandat 815.688 kb on + strandat 815.689 kb on - strandat 815.723 kb on + strandat 815.724 kb on - strandat 816.005 kb on + strand, within ABZR87_RS19805at 816.005 kb on + strand, within ABZR87_RS19805at 816.005 kb on + strand, within ABZR87_RS19805at 816.005 kb on + strand, within ABZR87_RS19805at 816.005 kb on + strand, within ABZR87_RS19805at 816.005 kb on + strand, within ABZR87_RS19805at 816.005 kb on + strand, within ABZR87_RS19805at 816.006 kb on - strand, within ABZR87_RS19805at 816.006 kb on - strand, within ABZR87_RS19805at 816.168 kb on + strand, within ABZR87_RS19805at 816.169 kb on - strand, within ABZR87_RS19805at 816.170 kb on + strand, within ABZR87_RS19805at 816.170 kb on + strand, within ABZR87_RS19805at 816.170 kb on + strand, within ABZR87_RS19805at 816.170 kb on + strand, within ABZR87_RS19805at 816.170 kb on + strand, within ABZR87_RS19805at 816.170 kb on + strand, within ABZR87_RS19805at 816.171 kb on - strand, within ABZR87_RS19805at 816.171 kb on - strand, within ABZR87_RS19805at 816.171 kb on - strand, within ABZR87_RS19805at 816.171 kb on - strand, within ABZR87_RS19805at 816.171 kb on - strand, within ABZR87_RS19805at 816.203 kb on + strand, within ABZR87_RS19805at 816.203 kb on + strand, within ABZR87_RS19805at 816.204 kb on - strand, within ABZR87_RS19805at 816.227 kb on + strand, within ABZR87_RS19805at 816.228 kb on - strand, within ABZR87_RS19805at 816.228 kb on - strand, within ABZR87_RS19805at 816.228 kb on - strand, within ABZR87_RS19805at 816.236 kb on + strand, within ABZR87_RS19805at 816.236 kb on + strand, within ABZR87_RS19805at 816.237 kb on - strand, within ABZR87_RS19805at 816.237 kb on - strand, within ABZR87_RS19805at 816.237 kb on - strand, within ABZR87_RS19805at 816.237 kb on - strand, within ABZR87_RS19805at 816.237 kb on - strand, within ABZR87_RS19805at 816.278 kb on + strand, within ABZR87_RS19805at 816.278 kb on + strand, within ABZR87_RS19805at 816.278 kb on + strand, within ABZR87_RS19805at 816.278 kb on + strand, within ABZR87_RS19805at 816.279 kb on - strand, within ABZR87_RS19805at 816.403 kb on + strand, within ABZR87_RS19805at 816.404 kb on - strand, within ABZR87_RS19805at 816.404 kb on - strand, within ABZR87_RS19805at 816.416 kb on + strand, within ABZR87_RS19805at 816.417 kb on - strand, within ABZR87_RS19805

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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813,569 + ABZR87_RS19795 0.46 +1.0
813,569 + ABZR87_RS19795 0.46 -1.5
813,570 - ABZR87_RS19795 0.46 +1.0
813,570 - ABZR87_RS19795 0.46 +0.8
813,690 - ABZR87_RS19795 0.53 +0.4
813,716 + ABZR87_RS19795 0.55 +1.2
813,716 + ABZR87_RS19795 0.55 +0.2
813,716 + ABZR87_RS19795 0.55 +0.7
813,717 - ABZR87_RS19795 0.55 -0.5
813,717 - ABZR87_RS19795 0.55 +1.0
813,717 - ABZR87_RS19795 0.55 +1.4
813,717 - ABZR87_RS19795 0.55 +0.2
813,734 + ABZR87_RS19795 0.56 +0.4
813,734 + ABZR87_RS19795 0.56 +0.4
813,735 - ABZR87_RS19795 0.56 +0.1
813,735 - ABZR87_RS19795 0.56 +0.3
813,735 - ABZR87_RS19795 0.56 -1.2
813,791 + ABZR87_RS19795 0.59 -0.8
813,792 - ABZR87_RS19795 0.59 +0.3
813,894 - ABZR87_RS19795 0.65 -0.5
813,911 + ABZR87_RS19795 0.66 +1.0
813,911 + ABZR87_RS19795 0.66 +0.4
813,935 + ABZR87_RS19795 0.68 -0.8
813,935 + ABZR87_RS19795 0.68 +0.8
813,935 + ABZR87_RS19795 0.68 -0.2
814,044 - ABZR87_RS19795 0.74 +1.3
814,215 - ABZR87_RS19795 0.84 +1.7
814,215 - ABZR87_RS19795 0.84 +0.8
814,215 - ABZR87_RS19795 0.84 +1.0
814,296 - ABZR87_RS19795 0.89 -0.1
814,437 - +0.3
814,482 - +0.8
814,482 - +0.3
814,731 - ABZR87_RS19800 0.15 +1.5
814,790 + ABZR87_RS19800 0.21 -0.2
814,790 + ABZR87_RS19800 0.21 -0.3
814,790 + ABZR87_RS19800 0.21 +0.2
814,790 + ABZR87_RS19800 0.21 -0.1
814,790 + ABZR87_RS19800 0.21 -0.6
814,790 + ABZR87_RS19800 0.21 -0.1
814,791 - ABZR87_RS19800 0.21 +0.4
814,791 - ABZR87_RS19800 0.21 -0.9
814,793 + ABZR87_RS19800 0.21 +0.5
814,794 - ABZR87_RS19800 0.21 -0.7
814,794 - ABZR87_RS19800 0.21 +0.2
814,952 + ABZR87_RS19800 0.36 -0.2
814,952 + ABZR87_RS19800 0.36 +0.6
814,953 - ABZR87_RS19800 0.36 +0.8
815,064 - ABZR87_RS19800 0.46 +1.2
815,064 - ABZR87_RS19800 0.46 -2.9
815,198 + ABZR87_RS19800 0.59 +1.2
815,199 - ABZR87_RS19800 0.59 -0.1
815,199 - ABZR87_RS19800 0.59 -1.9
815,199 - ABZR87_RS19800 0.59 -1.6
815,199 - ABZR87_RS19800 0.59 -0.4
815,199 - ABZR87_RS19800 0.59 +0.1
815,271 + ABZR87_RS19800 0.66 -1.1
815,367 - ABZR87_RS19800 0.74 +0.9
815,420 + ABZR87_RS19800 0.79 +1.4
815,420 + ABZR87_RS19800 0.79 +1.4
815,420 + ABZR87_RS19800 0.79 -0.1
815,420 + ABZR87_RS19800 0.79 +0.7
815,551 + -2.0
815,551 + +0.7
815,551 + +0.1
815,552 - +0.3
815,552 - +1.4
815,580 + -0.2
815,581 - -1.2
815,688 + +0.4
815,689 - +0.5
815,723 + -1.1
815,724 - +0.8
816,005 + ABZR87_RS19805 0.24 -0.9
816,005 + ABZR87_RS19805 0.24 +0.3
816,005 + ABZR87_RS19805 0.24 +0.3
816,005 + ABZR87_RS19805 0.24 -0.5
816,005 + ABZR87_RS19805 0.24 +0.4
816,005 + ABZR87_RS19805 0.24 -0.5
816,005 + ABZR87_RS19805 0.24 +1.4
816,006 - ABZR87_RS19805 0.24 +0.4
816,006 - ABZR87_RS19805 0.24 -0.4
816,168 + ABZR87_RS19805 0.37 +1.7
816,169 - ABZR87_RS19805 0.38 -0.3
816,170 + ABZR87_RS19805 0.38 +0.6
816,170 + ABZR87_RS19805 0.38 -0.7
816,170 + ABZR87_RS19805 0.38 -0.4
816,170 + ABZR87_RS19805 0.38 -0.7
816,170 + ABZR87_RS19805 0.38 +0.8
816,170 + ABZR87_RS19805 0.38 +0.8
816,171 - ABZR87_RS19805 0.38 +1.9
816,171 - ABZR87_RS19805 0.38 +0.6
816,171 - ABZR87_RS19805 0.38 -1.1
816,171 - ABZR87_RS19805 0.38 -0.7
816,171 - ABZR87_RS19805 0.38 -1.6
816,203 + ABZR87_RS19805 0.40 -0.1
816,203 + ABZR87_RS19805 0.40 +0.7
816,204 - ABZR87_RS19805 0.40 +0.7
816,227 + ABZR87_RS19805 0.42 +0.3
816,228 - ABZR87_RS19805 0.42 +0.4
816,228 - ABZR87_RS19805 0.42 +0.8
816,228 - ABZR87_RS19805 0.42 +3.0
816,236 + ABZR87_RS19805 0.43 +0.2
816,236 + ABZR87_RS19805 0.43 +0.9
816,237 - ABZR87_RS19805 0.43 -1.4
816,237 - ABZR87_RS19805 0.43 +0.8
816,237 - ABZR87_RS19805 0.43 +0.9
816,237 - ABZR87_RS19805 0.43 -0.2
816,237 - ABZR87_RS19805 0.43 +0.4
816,278 + ABZR87_RS19805 0.47 -0.7
816,278 + ABZR87_RS19805 0.47 +1.3
816,278 + ABZR87_RS19805 0.47 -0.2
816,278 + ABZR87_RS19805 0.47 +0.5
816,279 - ABZR87_RS19805 0.47 +1.3
816,403 + ABZR87_RS19805 0.57 +0.5
816,404 - ABZR87_RS19805 0.57 -0.7
816,404 - ABZR87_RS19805 0.57 +0.9
816,416 + ABZR87_RS19805 0.58 -0.8
816,417 - ABZR87_RS19805 0.58 -0.8

Or see this region's nucleotide sequence