Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18720 and ABZR87_RS18725 overlap by 1 nucleotides ABZR87_RS18725 and ABZR87_RS18730 overlap by 4 nucleotides
ABZR87_RS18720: ABZR87_RS18720 - TonB-dependent receptor, at 551,475 to 553,793
_RS18720
ABZR87_RS18725: ABZR87_RS18725 - sialidase family protein, at 553,793 to 555,046
_RS18725
ABZR87_RS18730: ABZR87_RS18730 - redoxin domain-containing protein, at 555,043 to 555,549
_RS18730
Position (kb) 553
554
555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 552.839 kb on - strand, within ABZR87_RS18720 at 552.963 kb on + strand, within ABZR87_RS18720 at 552.964 kb on - strand, within ABZR87_RS18720 at 553.241 kb on + strand, within ABZR87_RS18720 at 553.242 kb on - strand, within ABZR87_RS18720 at 553.242 kb on - strand, within ABZR87_RS18720 at 553.278 kb on + strand, within ABZR87_RS18720 at 553.278 kb on + strand, within ABZR87_RS18720 at 553.279 kb on - strand, within ABZR87_RS18720 at 553.279 kb on - strand, within ABZR87_RS18720 at 553.279 kb on - strand, within ABZR87_RS18720 at 553.365 kb on + strand, within ABZR87_RS18720 at 553.473 kb on + strand, within ABZR87_RS18720 at 553.473 kb on + strand, within ABZR87_RS18720 at 553.474 kb on - strand, within ABZR87_RS18720 at 553.626 kb on + strand at 553.627 kb on - strand at 553.671 kb on + strand at 553.676 kb on + strand at 553.732 kb on - strand at 553.740 kb on + strand at 553.741 kb on - strand at 553.767 kb on + strand at 553.767 kb on + strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.791 kb on + strand at 553.791 kb on + strand at 553.791 kb on + strand at 553.792 kb on - strand at 553.792 kb on - strand at 553.792 kb on - strand at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.337 kb on - strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.355 kb on - strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.536 kb on + strand, within ABZR87_RS18725 at 554.537 kb on - strand, within ABZR87_RS18725 at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.955 kb on - strand at 554.955 kb on - strand at 554.955 kb on - strand at 554.955 kb on - strand at 555.077 kb on + strand at 555.077 kb on + strand at 555.078 kb on - strand at 555.220 kb on + strand, within ABZR87_RS18730 at 555.221 kb on - strand, within ABZR87_RS18730 at 555.388 kb on + strand, within ABZR87_RS18730 at 555.389 kb on - strand, within ABZR87_RS18730 at 555.462 kb on + strand, within ABZR87_RS18730 at 555.462 kb on + strand, within ABZR87_RS18730 at 555.486 kb on + strand, within ABZR87_RS18730 at 555.486 kb on + strand, within ABZR87_RS18730 at 555.524 kb on + strand at 555.524 kb on + strand at 555.524 kb on + strand at 555.525 kb on - strand at 555.525 kb on - strand at 555.548 kb on - strand at 555.548 kb on - strand at 555.586 kb on - strand at 555.608 kb on + strand at 555.608 kb on + strand at 555.608 kb on + strand at 555.608 kb on + strand at 555.609 kb on - strand at 555.609 kb on - strand at 555.610 kb on + strand at 555.610 kb on + strand at 555.611 kb on - strand at 555.695 kb on + strand at 555.696 kb on - strand at 555.754 kb on + strand at 555.755 kb on - strand at 555.790 kb on + strand at 555.831 kb on + strand at 555.831 kb on + strand at 555.831 kb on + strand at 555.832 kb on - strand at 555.832 kb on - strand at 555.921 kb on + strand at 555.921 kb on + strand at 555.921 kb on + strand at 555.921 kb on + strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.945 kb on - strand at 555.945 kb on - strand at 556.013 kb on + strand at 556.013 kb on + strand at 556.013 kb on + strand at 556.014 kb on - strand at 556.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 552,839 - ABZR87_RS18720 0.59 +1.3 552,963 + ABZR87_RS18720 0.64 -0.3 552,964 - ABZR87_RS18720 0.64 +1.0 553,241 + ABZR87_RS18720 0.76 +0.0 553,242 - ABZR87_RS18720 0.76 +2.0 553,242 - ABZR87_RS18720 0.76 -1.5 553,278 + ABZR87_RS18720 0.78 +0.1 553,278 + ABZR87_RS18720 0.78 -1.1 553,279 - ABZR87_RS18720 0.78 -0.1 553,279 - ABZR87_RS18720 0.78 +0.0 553,279 - ABZR87_RS18720 0.78 -0.4 553,365 + ABZR87_RS18720 0.82 -0.7 553,473 + ABZR87_RS18720 0.86 +2.0 553,473 + ABZR87_RS18720 0.86 +0.5 553,474 - ABZR87_RS18720 0.86 -0.1 553,626 + +0.7 553,627 - -0.2 553,671 + +1.0 553,676 + -0.7 553,732 - +0.2 553,740 + +2.3 553,741 - -0.1 553,767 + -0.9 553,767 + +0.2 553,768 - -0.7 553,768 - +1.3 553,768 - -0.2 553,768 - +0.2 553,768 - -0.7 553,768 - -1.7 553,768 - +1.0 553,791 + -0.7 553,791 + +2.6 553,791 + -0.0 553,792 - +0.6 553,792 - -1.5 553,792 - +0.4 554,057 + ABZR87_RS18725 0.21 +1.0 554,057 + ABZR87_RS18725 0.21 +0.5 554,057 + ABZR87_RS18725 0.21 -2.8 554,057 + ABZR87_RS18725 0.21 +0.0 554,057 + ABZR87_RS18725 0.21 -0.7 554,057 + ABZR87_RS18725 0.21 -1.4 554,058 - ABZR87_RS18725 0.21 +0.0 554,058 - ABZR87_RS18725 0.21 -1.5 554,058 - ABZR87_RS18725 0.21 +0.7 554,111 + ABZR87_RS18725 0.25 -1.7 554,111 + ABZR87_RS18725 0.25 -0.8 554,111 + ABZR87_RS18725 0.25 -2.4 554,111 + ABZR87_RS18725 0.25 +1.0 554,111 + ABZR87_RS18725 0.25 -2.8 554,111 + ABZR87_RS18725 0.25 +0.7 554,111 + ABZR87_RS18725 0.25 +0.2 554,111 + ABZR87_RS18725 0.25 +0.5 554,111 + ABZR87_RS18725 0.25 -0.2 554,111 + ABZR87_RS18725 0.25 -0.1 554,112 - ABZR87_RS18725 0.25 +0.2 554,112 - ABZR87_RS18725 0.25 -0.9 554,112 - ABZR87_RS18725 0.25 +1.6 554,112 - ABZR87_RS18725 0.25 -0.3 554,112 - ABZR87_RS18725 0.25 -0.4 554,112 - ABZR87_RS18725 0.25 -2.5 554,144 + ABZR87_RS18725 0.28 -0.1 554,144 + ABZR87_RS18725 0.28 -0.8 554,144 + ABZR87_RS18725 0.28 -0.2 554,337 - ABZR87_RS18725 0.43 -0.7 554,354 + ABZR87_RS18725 0.45 +1.7 554,354 + ABZR87_RS18725 0.45 +1.1 554,354 + ABZR87_RS18725 0.45 +0.7 554,355 - ABZR87_RS18725 0.45 -0.2 554,357 + ABZR87_RS18725 0.45 +1.0 554,357 + ABZR87_RS18725 0.45 -0.5 554,357 + ABZR87_RS18725 0.45 -0.2 554,357 + ABZR87_RS18725 0.45 -0.0 554,357 + ABZR87_RS18725 0.45 +0.1 554,357 + ABZR87_RS18725 0.45 -0.3 554,358 - ABZR87_RS18725 0.45 +0.2 554,358 - ABZR87_RS18725 0.45 -0.5 554,358 - ABZR87_RS18725 0.45 -0.1 554,358 - ABZR87_RS18725 0.45 +0.5 554,358 - ABZR87_RS18725 0.45 +0.5 554,536 + ABZR87_RS18725 0.59 -2.4 554,537 - ABZR87_RS18725 0.59 -0.4 554,954 + -0.7 554,954 + -3.0 554,954 + -0.5 554,954 + -0.2 554,954 + -1.9 554,954 + +1.2 554,955 - -0.1 554,955 - -0.9 554,955 - +0.7 554,955 - +0.7 555,077 + +2.0 555,077 + -1.1 555,078 - +1.8 555,220 + ABZR87_RS18730 0.35 -0.2 555,221 - ABZR87_RS18730 0.35 +0.2 555,388 + ABZR87_RS18730 0.68 +0.4 555,389 - ABZR87_RS18730 0.68 +1.2 555,462 + ABZR87_RS18730 0.83 -0.1 555,462 + ABZR87_RS18730 0.83 -1.0 555,486 + ABZR87_RS18730 0.87 +1.3 555,486 + ABZR87_RS18730 0.87 +2.3 555,524 + +0.9 555,524 + +0.6 555,524 + -0.9 555,525 - +0.6 555,525 - -3.6 555,548 - -0.3 555,548 - +0.9 555,586 - +0.7 555,608 + -1.7 555,608 + -0.9 555,608 + +0.9 555,608 + -0.8 555,609 - +0.1 555,609 - -0.5 555,610 + +0.5 555,610 + -0.1 555,611 - +0.0 555,695 + -0.1 555,696 - -0.6 555,754 + -0.1 555,755 - -0.7 555,790 + -1.5 555,831 + +1.0 555,831 + +0.2 555,831 + -0.1 555,832 - -0.2 555,832 - -0.3 555,921 + -0.9 555,921 + +1.4 555,921 + -0.7 555,921 + +0.4 555,922 - +0.2 555,922 - +0.0 555,922 - -0.1 555,922 - +0.5 555,922 - +0.5 555,945 - +0.1 555,945 - +0.4 556,013 + -1.1 556,013 + -1.6 556,013 + +0.9 556,014 - -0.3 556,014 - -1.1
Or see this region's nucleotide sequence