Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17465

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17460 and ABZR87_RS17465 are separated by 61 nucleotidesABZR87_RS17465 and ABZR87_RS17470 are separated by 72 nucleotides ABZR87_RS17460: ABZR87_RS17460 - acyl-CoA dehydrogenase, at 276,058 to 277,191 _RS17460 ABZR87_RS17465: ABZR87_RS17465 - AMP-binding protein, at 277,253 to 278,947 _RS17465 ABZR87_RS17470: ABZR87_RS17470 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 279,020 to 280,567 _RS17470 Position (kb) 277 278 279Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 276.254 kb on - strand, within ABZR87_RS17460at 276.263 kb on - strand, within ABZR87_RS17460at 276.263 kb on - strand, within ABZR87_RS17460at 276.386 kb on - strand, within ABZR87_RS17460at 276.386 kb on - strand, within ABZR87_RS17460at 276.848 kb on - strand, within ABZR87_RS17460at 277.021 kb on + strand, within ABZR87_RS17460at 277.022 kb on - strand, within ABZR87_RS17460at 277.022 kb on - strand, within ABZR87_RS17460at 277.084 kb on + strandat 277.096 kb on + strandat 277.141 kb on + strandat 277.141 kb on + strandat 277.142 kb on - strandat 277.142 kb on - strandat 277.142 kb on - strandat 277.189 kb on + strandat 277.190 kb on - strandat 277.190 kb on - strandat 277.190 kb on - strandat 277.267 kb on - strandat 277.267 kb on - strandat 277.389 kb on - strandat 277.389 kb on - strandat 277.717 kb on + strand, within ABZR87_RS17465at 277.718 kb on - strand, within ABZR87_RS17465at 277.718 kb on - strand, within ABZR87_RS17465at 277.800 kb on - strand, within ABZR87_RS17465at 277.862 kb on + strand, within ABZR87_RS17465at 277.863 kb on - strand, within ABZR87_RS17465at 277.947 kb on - strand, within ABZR87_RS17465at 278.064 kb on - strand, within ABZR87_RS17465at 278.070 kb on - strand, within ABZR87_RS17465at 278.070 kb on - strand, within ABZR87_RS17465at 278.116 kb on + strand, within ABZR87_RS17465at 278.183 kb on + strand, within ABZR87_RS17465at 278.184 kb on - strand, within ABZR87_RS17465at 278.513 kb on + strand, within ABZR87_RS17465at 278.513 kb on + strand, within ABZR87_RS17465at 278.516 kb on + strand, within ABZR87_RS17465at 278.517 kb on - strand, within ABZR87_RS17465at 278.517 kb on - strand, within ABZR87_RS17465at 278.517 kb on - strand, within ABZR87_RS17465at 278.564 kb on + strand, within ABZR87_RS17465at 278.565 kb on - strand, within ABZR87_RS17465at 278.565 kb on - strand, within ABZR87_RS17465at 278.798 kb on + strandat 278.799 kb on - strandat 278.925 kb on - strandat 279.474 kb on - strand, within ABZR87_RS17470at 279.773 kb on + strand, within ABZR87_RS17470at 279.773 kb on + strand, within ABZR87_RS17470at 279.773 kb on + strand, within ABZR87_RS17470at 279.774 kb on - strand, within ABZR87_RS17470at 279.774 kb on - strand, within ABZR87_RS17470

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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276,254 - ABZR87_RS17460 0.17 -4.0
276,263 - ABZR87_RS17460 0.18 -0.3
276,263 - ABZR87_RS17460 0.18 -4.8
276,386 - ABZR87_RS17460 0.29 -3.6
276,386 - ABZR87_RS17460 0.29 -2.5
276,848 - ABZR87_RS17460 0.70 -2.6
277,021 + ABZR87_RS17460 0.85 +2.2
277,022 - ABZR87_RS17460 0.85 -1.0
277,022 - ABZR87_RS17460 0.85 -1.0
277,084 + +2.4
277,096 + +2.2
277,141 + +0.3
277,141 + +2.9
277,142 - -2.9
277,142 - -2.2
277,142 - -2.0
277,189 + -0.5
277,190 - -3.2
277,190 - +0.9
277,190 - -2.4
277,267 - -4.9
277,267 - -2.2
277,389 - -4.2
277,389 - +0.0
277,717 + ABZR87_RS17465 0.27 -3.9
277,718 - ABZR87_RS17465 0.27 -1.9
277,718 - ABZR87_RS17465 0.27 -3.9
277,800 - ABZR87_RS17465 0.32 -0.7
277,862 + ABZR87_RS17465 0.36 -2.3
277,863 - ABZR87_RS17465 0.36 +0.2
277,947 - ABZR87_RS17465 0.41 -3.5
278,064 - ABZR87_RS17465 0.48 -1.3
278,070 - ABZR87_RS17465 0.48 -1.1
278,070 - ABZR87_RS17465 0.48 -2.9
278,116 + ABZR87_RS17465 0.51 -1.8
278,183 + ABZR87_RS17465 0.55 -2.0
278,184 - ABZR87_RS17465 0.55 -3.2
278,513 + ABZR87_RS17465 0.74 -1.2
278,513 + ABZR87_RS17465 0.74 +0.4
278,516 + ABZR87_RS17465 0.75 -1.0
278,517 - ABZR87_RS17465 0.75 -1.7
278,517 - ABZR87_RS17465 0.75 -4.4
278,517 - ABZR87_RS17465 0.75 -0.8
278,564 + ABZR87_RS17465 0.77 +1.0
278,565 - ABZR87_RS17465 0.77 -3.6
278,565 - ABZR87_RS17465 0.77 -2.0
278,798 + -0.2
278,799 - -2.3
278,925 - -2.1
279,474 - ABZR87_RS17470 0.29 -3.5
279,773 + ABZR87_RS17470 0.49 +1.2
279,773 + ABZR87_RS17470 0.49 -3.1
279,773 + ABZR87_RS17470 0.49 -0.9
279,774 - ABZR87_RS17470 0.49 -2.2
279,774 - ABZR87_RS17470 0.49 -2.0

Or see this region's nucleotide sequence