Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16630 and ABZR87_RS16635 are separated by 90 nucleotides ABZR87_RS16635 and ABZR87_RS16640 are separated by 173 nucleotides ABZR87_RS16640 and ABZR87_RS16645 are separated by 2 nucleotides ABZR87_RS16645 and ABZR87_RS16650 are separated by 79 nucleotides
ABZR87_RS16630: ABZR87_RS16630 - 2-oxoglutarate dehydrogenase E1 component, at 79,890 to 82,463
_RS16630
ABZR87_RS16635: ABZR87_RS16635 - MFS family transporter, at 82,554 to 83,858
_RS16635
ABZR87_RS16640: ABZR87_RS16640 - addiction module antidote protein, at 84,032 to 84,334
_RS16640
ABZR87_RS16645: ABZR87_RS16645 - type II toxin-antitoxin system RelE/ParE family toxin, at 84,337 to 84,636
_RS16645
ABZR87_RS16650: ABZR87_RS16650 - MFS transporter, at 84,716 to 85,930
_RS16650
Position (kb) 82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 81.570 kb on + strand, within ABZR87_RS16630 at 81.666 kb on + strand, within ABZR87_RS16630 at 81.666 kb on + strand, within ABZR87_RS16630 at 81.667 kb on - strand, within ABZR87_RS16630 at 81.667 kb on - strand, within ABZR87_RS16630 at 81.753 kb on + strand, within ABZR87_RS16630 at 81.754 kb on - strand, within ABZR87_RS16630 at 81.754 kb on - strand, within ABZR87_RS16630 at 81.771 kb on + strand, within ABZR87_RS16630 at 81.771 kb on + strand, within ABZR87_RS16630 at 81.772 kb on - strand, within ABZR87_RS16630 at 81.772 kb on - strand, within ABZR87_RS16630 at 81.772 kb on - strand, within ABZR87_RS16630 at 82.100 kb on + strand, within ABZR87_RS16630 at 82.134 kb on + strand, within ABZR87_RS16630 at 82.170 kb on - strand, within ABZR87_RS16630 at 82.203 kb on + strand, within ABZR87_RS16630 at 82.204 kb on - strand, within ABZR87_RS16630 at 82.204 kb on - strand, within ABZR87_RS16630 at 82.363 kb on + strand at 82.363 kb on + strand at 82.363 kb on + strand at 82.364 kb on - strand at 82.364 kb on - strand at 82.523 kb on - strand at 82.573 kb on + strand at 82.573 kb on + strand at 82.574 kb on - strand at 82.574 kb on - strand at 82.574 kb on - strand at 82.603 kb on + strand at 82.603 kb on + strand at 82.603 kb on + strand at 82.603 kb on + strand at 82.604 kb on - strand at 82.604 kb on - strand at 82.642 kb on + strand at 82.643 kb on - strand at 82.648 kb on + strand at 82.648 kb on + strand at 82.648 kb on + strand at 82.649 kb on - strand at 82.649 kb on - strand at 82.649 kb on - strand at 82.693 kb on + strand, within ABZR87_RS16635 at 82.693 kb on + strand, within ABZR87_RS16635 at 82.694 kb on - strand, within ABZR87_RS16635 at 82.806 kb on - strand, within ABZR87_RS16635 at 82.806 kb on - strand, within ABZR87_RS16635 at 82.807 kb on + strand, within ABZR87_RS16635 at 82.807 kb on + strand, within ABZR87_RS16635 at 82.807 kb on + strand, within ABZR87_RS16635 at 82.807 kb on + strand, within ABZR87_RS16635 at 82.807 kb on + strand, within ABZR87_RS16635 at 82.808 kb on - strand, within ABZR87_RS16635 at 82.808 kb on - strand, within ABZR87_RS16635 at 82.971 kb on + strand, within ABZR87_RS16635 at 82.972 kb on - strand, within ABZR87_RS16635 at 82.972 kb on - strand, within ABZR87_RS16635 at 82.990 kb on + strand, within ABZR87_RS16635 at 82.990 kb on + strand, within ABZR87_RS16635 at 82.990 kb on + strand, within ABZR87_RS16635 at 82.991 kb on - strand, within ABZR87_RS16635 at 82.991 kb on - strand, within ABZR87_RS16635 at 82.991 kb on - strand, within ABZR87_RS16635 at 82.991 kb on - strand, within ABZR87_RS16635 at 83.059 kb on + strand, within ABZR87_RS16635 at 83.059 kb on + strand, within ABZR87_RS16635 at 83.059 kb on + strand, within ABZR87_RS16635 at 83.059 kb on + strand, within ABZR87_RS16635 at 83.060 kb on - strand, within ABZR87_RS16635 at 83.071 kb on + strand, within ABZR87_RS16635 at 83.071 kb on + strand, within ABZR87_RS16635 at 83.071 kb on + strand, within ABZR87_RS16635 at 83.071 kb on + strand, within ABZR87_RS16635 at 83.071 kb on + strand, within ABZR87_RS16635 at 83.071 kb on + strand, within ABZR87_RS16635 at 83.072 kb on - strand, within ABZR87_RS16635 at 83.072 kb on - strand, within ABZR87_RS16635 at 83.072 kb on - strand, within ABZR87_RS16635 at 83.072 kb on - strand, within ABZR87_RS16635 at 83.072 kb on - strand, within ABZR87_RS16635 at 83.086 kb on + strand, within ABZR87_RS16635 at 83.086 kb on + strand, within ABZR87_RS16635 at 83.087 kb on - strand, within ABZR87_RS16635 at 83.087 kb on - strand, within ABZR87_RS16635 at 83.112 kb on - strand, within ABZR87_RS16635 at 83.227 kb on + strand, within ABZR87_RS16635 at 83.228 kb on - strand, within ABZR87_RS16635 at 83.228 kb on - strand, within ABZR87_RS16635 at 83.228 kb on - strand, within ABZR87_RS16635 at 83.368 kb on + strand, within ABZR87_RS16635 at 83.368 kb on + strand, within ABZR87_RS16635 at 83.368 kb on + strand, within ABZR87_RS16635 at 83.368 kb on + strand, within ABZR87_RS16635 at 83.422 kb on + strand, within ABZR87_RS16635 at 83.422 kb on + strand, within ABZR87_RS16635 at 83.422 kb on + strand, within ABZR87_RS16635 at 83.422 kb on + strand, within ABZR87_RS16635 at 83.422 kb on + strand, within ABZR87_RS16635 at 83.423 kb on - strand, within ABZR87_RS16635 at 83.423 kb on - strand, within ABZR87_RS16635 at 83.423 kb on - strand, within ABZR87_RS16635 at 83.441 kb on - strand, within ABZR87_RS16635 at 83.518 kb on + strand, within ABZR87_RS16635 at 83.518 kb on + strand, within ABZR87_RS16635 at 83.519 kb on - strand, within ABZR87_RS16635 at 83.519 kb on - strand, within ABZR87_RS16635 at 83.726 kb on - strand, within ABZR87_RS16635 at 83.743 kb on + strand at 83.743 kb on + strand at 83.749 kb on + strand at 83.749 kb on + strand at 83.749 kb on + strand at 83.749 kb on + strand at 83.749 kb on + strand at 83.749 kb on + strand at 83.750 kb on - strand at 83.750 kb on - strand at 83.750 kb on - strand at 83.750 kb on - strand at 83.853 kb on - strand at 83.853 kb on - strand at 83.853 kb on - strand at 83.894 kb on + strand at 83.895 kb on - strand at 83.997 kb on + strand at 83.997 kb on + strand at 84.034 kb on - strand at 84.034 kb on - strand at 84.034 kb on - strand at 84.034 kb on - strand at 84.034 kb on - strand at 84.034 kb on - strand at 84.126 kb on + strand, within ABZR87_RS16640 at 84.126 kb on + strand, within ABZR87_RS16640 at 84.126 kb on + strand, within ABZR87_RS16640 at 84.126 kb on + strand, within ABZR87_RS16640 at 84.126 kb on + strand, within ABZR87_RS16640 at 84.126 kb on + strand, within ABZR87_RS16640 at 84.127 kb on - strand, within ABZR87_RS16640 at 84.127 kb on - strand, within ABZR87_RS16640 at 84.191 kb on + strand, within ABZR87_RS16640 at 84.191 kb on + strand, within ABZR87_RS16640 at 84.255 kb on + strand, within ABZR87_RS16640 at 84.256 kb on - strand, within ABZR87_RS16640 at 84.256 kb on - strand, within ABZR87_RS16640 at 84.256 kb on - strand, within ABZR87_RS16640 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.416 kb on - strand, within ABZR87_RS16645 at 84.416 kb on - strand, within ABZR87_RS16645 at 84.416 kb on - strand, within ABZR87_RS16645 at 84.416 kb on - strand, within ABZR87_RS16645 at 84.452 kb on + strand, within ABZR87_RS16645 at 84.453 kb on - strand, within ABZR87_RS16645 at 84.453 kb on - strand, within ABZR87_RS16645 at 84.484 kb on + strand, within ABZR87_RS16645 at 84.484 kb on + strand, within ABZR87_RS16645 at 84.484 kb on + strand, within ABZR87_RS16645 at 84.484 kb on + strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.538 kb on + strand, within ABZR87_RS16645 at 84.538 kb on + strand, within ABZR87_RS16645 at 84.538 kb on + strand, within ABZR87_RS16645 at 84.539 kb on - strand, within ABZR87_RS16645 at 84.539 kb on - strand, within ABZR87_RS16645 at 84.539 kb on - strand, within ABZR87_RS16645 at 84.553 kb on + strand, within ABZR87_RS16645 at 84.553 kb on + strand, within ABZR87_RS16645 at 84.553 kb on + strand, within ABZR87_RS16645 at 84.553 kb on + strand, within ABZR87_RS16645 at 84.618 kb on + strand at 84.618 kb on + strand at 84.618 kb on + strand at 84.618 kb on + strand at 84.619 kb on - strand at 84.619 kb on - strand at 84.619 kb on - strand at 84.619 kb on - strand at 84.619 kb on - strand at 84.718 kb on - strand at 84.718 kb on - strand at 84.837 kb on + strand at 84.837 kb on + strand at 84.838 kb on - strand, within ABZR87_RS16650
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 81,570 + ABZR87_RS16630 0.65 -0.2 81,666 + ABZR87_RS16630 0.69 +0.2 81,666 + ABZR87_RS16630 0.69 +0.4 81,667 - ABZR87_RS16630 0.69 -0.2 81,667 - ABZR87_RS16630 0.69 -1.2 81,753 + ABZR87_RS16630 0.72 -0.4 81,754 - ABZR87_RS16630 0.72 -0.3 81,754 - ABZR87_RS16630 0.72 -1.2 81,771 + ABZR87_RS16630 0.73 -0.1 81,771 + ABZR87_RS16630 0.73 -0.0 81,772 - ABZR87_RS16630 0.73 -0.1 81,772 - ABZR87_RS16630 0.73 +1.7 81,772 - ABZR87_RS16630 0.73 -0.4 82,100 + ABZR87_RS16630 0.86 -0.4 82,134 + ABZR87_RS16630 0.87 +0.1 82,170 - ABZR87_RS16630 0.89 -0.0 82,203 + ABZR87_RS16630 0.90 +0.1 82,204 - ABZR87_RS16630 0.90 -0.2 82,204 - ABZR87_RS16630 0.90 -0.9 82,363 + -0.3 82,363 + -0.1 82,363 + +0.4 82,364 - -2.2 82,364 - -1.2 82,523 - -1.5 82,573 + -1.9 82,573 + -3.0 82,574 - -1.2 82,574 - +0.7 82,574 - -0.2 82,603 + -0.2 82,603 + -2.5 82,603 + +0.2 82,603 + +0.6 82,604 - +0.1 82,604 - -0.7 82,642 + -0.4 82,643 - -0.9 82,648 + +0.8 82,648 + -1.1 82,648 + +1.3 82,649 - -0.2 82,649 - -0.5 82,649 - +0.1 82,693 + ABZR87_RS16635 0.11 -0.4 82,693 + ABZR87_RS16635 0.11 -3.7 82,694 - ABZR87_RS16635 0.11 -0.9 82,806 - ABZR87_RS16635 0.19 -2.7 82,806 - ABZR87_RS16635 0.19 +0.2 82,807 + ABZR87_RS16635 0.19 -0.9 82,807 + ABZR87_RS16635 0.19 +0.4 82,807 + ABZR87_RS16635 0.19 +0.7 82,807 + ABZR87_RS16635 0.19 +1.2 82,807 + ABZR87_RS16635 0.19 +0.2 82,808 - ABZR87_RS16635 0.19 -0.2 82,808 - ABZR87_RS16635 0.19 +0.4 82,971 + ABZR87_RS16635 0.32 +1.1 82,972 - ABZR87_RS16635 0.32 +1.1 82,972 - ABZR87_RS16635 0.32 +0.4 82,990 + ABZR87_RS16635 0.33 +0.8 82,990 + ABZR87_RS16635 0.33 -0.4 82,990 + ABZR87_RS16635 0.33 -2.7 82,991 - ABZR87_RS16635 0.33 +1.0 82,991 - ABZR87_RS16635 0.33 -1.4 82,991 - ABZR87_RS16635 0.33 +1.2 82,991 - ABZR87_RS16635 0.33 +0.7 83,059 + ABZR87_RS16635 0.39 +0.3 83,059 + ABZR87_RS16635 0.39 +0.0 83,059 + ABZR87_RS16635 0.39 +0.1 83,059 + ABZR87_RS16635 0.39 +0.7 83,060 - ABZR87_RS16635 0.39 -0.2 83,071 + ABZR87_RS16635 0.40 +1.9 83,071 + ABZR87_RS16635 0.40 -0.3 83,071 + ABZR87_RS16635 0.40 -0.1 83,071 + ABZR87_RS16635 0.40 -0.1 83,071 + ABZR87_RS16635 0.40 -0.3 83,071 + ABZR87_RS16635 0.40 -0.8 83,072 - ABZR87_RS16635 0.40 +0.8 83,072 - ABZR87_RS16635 0.40 +0.9 83,072 - ABZR87_RS16635 0.40 -1.2 83,072 - ABZR87_RS16635 0.40 +1.2 83,072 - ABZR87_RS16635 0.40 +1.1 83,086 + ABZR87_RS16635 0.41 +0.3 83,086 + ABZR87_RS16635 0.41 -0.9 83,087 - ABZR87_RS16635 0.41 +0.2 83,087 - ABZR87_RS16635 0.41 -1.7 83,112 - ABZR87_RS16635 0.43 +0.3 83,227 + ABZR87_RS16635 0.52 +0.3 83,228 - ABZR87_RS16635 0.52 +0.4 83,228 - ABZR87_RS16635 0.52 +0.6 83,228 - ABZR87_RS16635 0.52 +0.2 83,368 + ABZR87_RS16635 0.62 -0.4 83,368 + ABZR87_RS16635 0.62 +0.4 83,368 + ABZR87_RS16635 0.62 +2.1 83,368 + ABZR87_RS16635 0.62 -0.2 83,422 + ABZR87_RS16635 0.67 -0.6 83,422 + ABZR87_RS16635 0.67 +0.8 83,422 + ABZR87_RS16635 0.67 +0.4 83,422 + ABZR87_RS16635 0.67 +0.4 83,422 + ABZR87_RS16635 0.67 -2.5 83,423 - ABZR87_RS16635 0.67 -0.5 83,423 - ABZR87_RS16635 0.67 -0.8 83,423 - ABZR87_RS16635 0.67 -3.7 83,441 - ABZR87_RS16635 0.68 -0.8 83,518 + ABZR87_RS16635 0.74 +1.5 83,518 + ABZR87_RS16635 0.74 +2.1 83,519 - ABZR87_RS16635 0.74 +0.8 83,519 - ABZR87_RS16635 0.74 +0.0 83,726 - ABZR87_RS16635 0.90 -0.5 83,743 + +0.3 83,743 + +2.3 83,749 + +0.7 83,749 + -0.4 83,749 + +1.1 83,749 + -0.5 83,749 + +0.2 83,749 + +1.7 83,750 - +0.6 83,750 - +0.6 83,750 - -0.9 83,750 - -2.2 83,853 - +1.1 83,853 - +0.4 83,853 - +0.1 83,894 + -0.5 83,895 - +0.0 83,997 + +0.8 83,997 + +0.6 84,034 - -0.3 84,034 - -0.4 84,034 - +0.0 84,034 - +0.9 84,034 - +0.7 84,034 - -2.8 84,126 + ABZR87_RS16640 0.31 -1.3 84,126 + ABZR87_RS16640 0.31 +1.8 84,126 + ABZR87_RS16640 0.31 -0.1 84,126 + ABZR87_RS16640 0.31 +0.6 84,126 + ABZR87_RS16640 0.31 +0.9 84,126 + ABZR87_RS16640 0.31 -0.1 84,127 - ABZR87_RS16640 0.31 +0.5 84,127 - ABZR87_RS16640 0.31 +0.7 84,191 + ABZR87_RS16640 0.52 +3.4 84,191 + ABZR87_RS16640 0.52 -2.7 84,255 + ABZR87_RS16640 0.74 -0.5 84,256 - ABZR87_RS16640 0.74 +0.4 84,256 - ABZR87_RS16640 0.74 +1.9 84,256 - ABZR87_RS16640 0.74 +0.0 84,415 + ABZR87_RS16645 0.26 -0.8 84,415 + ABZR87_RS16645 0.26 -0.3 84,415 + ABZR87_RS16645 0.26 -1.0 84,415 + ABZR87_RS16645 0.26 +0.1 84,415 + ABZR87_RS16645 0.26 -0.6 84,415 + ABZR87_RS16645 0.26 +0.2 84,415 + ABZR87_RS16645 0.26 -0.4 84,415 + ABZR87_RS16645 0.26 +0.3 84,416 - ABZR87_RS16645 0.26 -1.1 84,416 - ABZR87_RS16645 0.26 +0.1 84,416 - ABZR87_RS16645 0.26 +1.0 84,416 - ABZR87_RS16645 0.26 -0.1 84,452 + ABZR87_RS16645 0.38 -0.1 84,453 - ABZR87_RS16645 0.39 -0.1 84,453 - ABZR87_RS16645 0.39 +0.2 84,484 + ABZR87_RS16645 0.49 -0.4 84,484 + ABZR87_RS16645 0.49 -1.8 84,484 + ABZR87_RS16645 0.49 +0.6 84,484 + ABZR87_RS16645 0.49 -2.2 84,485 - ABZR87_RS16645 0.49 -0.4 84,485 - ABZR87_RS16645 0.49 +0.9 84,485 - ABZR87_RS16645 0.49 -0.9 84,485 - ABZR87_RS16645 0.49 -0.8 84,485 - ABZR87_RS16645 0.49 +1.5 84,485 - ABZR87_RS16645 0.49 -0.0 84,485 - ABZR87_RS16645 0.49 +0.1 84,485 - ABZR87_RS16645 0.49 +1.3 84,485 - ABZR87_RS16645 0.49 +0.4 84,538 + ABZR87_RS16645 0.67 +1.3 84,538 + ABZR87_RS16645 0.67 +0.3 84,538 + ABZR87_RS16645 0.67 -1.0 84,539 - ABZR87_RS16645 0.67 +0.4 84,539 - ABZR87_RS16645 0.67 +0.6 84,539 - ABZR87_RS16645 0.67 +0.5 84,553 + ABZR87_RS16645 0.72 +0.1 84,553 + ABZR87_RS16645 0.72 -1.8 84,553 + ABZR87_RS16645 0.72 +0.1 84,553 + ABZR87_RS16645 0.72 -2.1 84,618 + +2.7 84,618 + -0.1 84,618 + +0.6 84,618 + +1.5 84,619 - -3.0 84,619 - -0.2 84,619 - -0.3 84,619 - +1.7 84,619 - -0.1 84,718 - -0.5 84,718 - -1.3 84,837 + -0.4 84,837 + +0.5 84,838 - ABZR87_RS16650 0.10 +0.2
Or see this region's nucleotide sequence