Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11890

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11880 and ABZR87_RS11885 overlap by 4 nucleotidesABZR87_RS11885 and ABZR87_RS11890 are separated by 41 nucleotidesABZR87_RS11890 and ABZR87_RS11895 are separated by 4 nucleotidesABZR87_RS11895 and ABZR87_RS11900 are separated by 22 nucleotides ABZR87_RS11880: ABZR87_RS11880 - 3-hydroxyacyl-ACP dehydratase FabZ, at 2,523,952 to 2,524,455 _RS11880 ABZR87_RS11885: ABZR87_RS11885 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 2,524,452 to 2,525,267 _RS11885 ABZR87_RS11890: ABZR87_RS11890 - lipid-A-disaccharide synthase, at 2,525,309 to 2,526,442 _RS11890 ABZR87_RS11895: ABZR87_RS11895 - ribonuclease HII, at 2,526,447 to 2,527,145 _RS11895 ABZR87_RS11900: ABZR87_RS11900 - RNA methyltransferase, at 2,527,168 to 2,527,950 _RS11900 Position (kb) 2525 2526 2527Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2526.434 kb on - strandat 2526.593 kb on - strand, within ABZR87_RS11895at 2526.666 kb on + strand, within ABZR87_RS11895at 2526.667 kb on - strand, within ABZR87_RS11895at 2526.667 kb on - strand, within ABZR87_RS11895at 2526.972 kb on + strand, within ABZR87_RS11895at 2526.973 kb on - strand, within ABZR87_RS11895at 2526.973 kb on - strand, within ABZR87_RS11895at 2527.291 kb on + strand, within ABZR87_RS11900at 2527.291 kb on + strand, within ABZR87_RS11900at 2527.291 kb on + strand, within ABZR87_RS11900at 2527.291 kb on + strand, within ABZR87_RS11900at 2527.308 kb on + strand, within ABZR87_RS11900at 2527.308 kb on + strand, within ABZR87_RS11900at 2527.309 kb on - strand, within ABZR87_RS11900

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,526,434 - -0.4
2,526,593 - ABZR87_RS11895 0.21 +0.6
2,526,666 + ABZR87_RS11895 0.31 +0.5
2,526,667 - ABZR87_RS11895 0.31 -2.9
2,526,667 - ABZR87_RS11895 0.31 +0.4
2,526,972 + ABZR87_RS11895 0.75 -0.3
2,526,973 - ABZR87_RS11895 0.75 +0.5
2,526,973 - ABZR87_RS11895 0.75 -1.4
2,527,291 + ABZR87_RS11900 0.16 -0.1
2,527,291 + ABZR87_RS11900 0.16 +0.5
2,527,291 + ABZR87_RS11900 0.16 +0.3
2,527,291 + ABZR87_RS11900 0.16 +0.9
2,527,308 + ABZR87_RS11900 0.18 +1.0
2,527,308 + ABZR87_RS11900 0.18 +1.8
2,527,309 - ABZR87_RS11900 0.18 -0.1

Or see this region's nucleotide sequence