Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11115

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11110 and ABZR87_RS11115 are separated by 134 nucleotidesABZR87_RS11115 and ABZR87_RS11120 are separated by 187 nucleotides ABZR87_RS11110: ABZR87_RS11110 - 2-oxoglutarate dehydrogenase E1 component, at 2,355,184 to 2,358,048 _RS11110 ABZR87_RS11115: ABZR87_RS11115 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 2,358,183 to 2,359,442 _RS11115 ABZR87_RS11120: ABZR87_RS11120 - dihydrolipoyl dehydrogenase, at 2,359,630 to 2,361,066 _RS11120 Position (kb) 2358 2359 2360Strain fitness (log2 ratio) -3 -2 -1 0 1at 2358.046 kb on + strandat 2358.046 kb on + strandat 2358.117 kb on + strandat 2358.117 kb on + strandat 2358.117 kb on + strandat 2358.117 kb on + strandat 2359.458 kb on + strandat 2359.504 kb on + strandat 2359.504 kb on + strandat 2359.504 kb on + strandat 2359.504 kb on + strandat 2359.504 kb on + strandat 2359.504 kb on + strandat 2359.504 kb on + strandat 2359.573 kb on + strandat 2359.574 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,358,046 + -3.6
2,358,046 + +0.5
2,358,117 + -0.4
2,358,117 + +1.5
2,358,117 + -0.3
2,358,117 + -0.4
2,359,458 + +0.1
2,359,504 + +0.8
2,359,504 + -0.3
2,359,504 + -0.8
2,359,504 + -0.3
2,359,504 + +0.7
2,359,504 + -0.0
2,359,504 + -3.1
2,359,573 + -0.6
2,359,574 - +0.7

Or see this region's nucleotide sequence