Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08570

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08565 and ABZR87_RS08570 are separated by 215 nucleotidesABZR87_RS08570 and ABZR87_RS08575 are separated by 292 nucleotidesABZR87_RS08575 and ABZR87_RS08580 are separated by 30 nucleotides ABZR87_RS08565: ABZR87_RS08565 - glutamate-1-semialdehyde 2,1-aminomutase, at 1,817,202 to 1,818,503 _RS08565 ABZR87_RS08570: ABZR87_RS08570 - rubredoxin, at 1,818,719 to 1,818,901 _RS08570 ABZR87_RS08575: ABZR87_RS08575 - response regulator, at 1,819,194 to 1,819,691 _RS08575 ABZR87_RS08580: ABZR87_RS08580 - response regulator, at 1,819,722 to 1,820,090 _RS08580 Position (kb) 1818 1819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1818.578 kb on + strandat 1818.688 kb on + strandat 1818.688 kb on + strandat 1818.688 kb on + strandat 1818.688 kb on + strandat 1818.688 kb on + strandat 1818.691 kb on + strandat 1818.691 kb on + strandat 1818.962 kb on + strandat 1818.962 kb on + strandat 1818.962 kb on + strandat 1818.963 kb on - strandat 1818.963 kb on - strandat 1818.963 kb on - strandat 1819.047 kb on + strandat 1819.047 kb on + strandat 1819.047 kb on + strandat 1819.047 kb on + strandat 1819.047 kb on + strandat 1819.048 kb on - strandat 1819.048 kb on - strandat 1819.048 kb on - strandat 1819.048 kb on - strandat 1819.048 kb on - strandat 1819.048 kb on - strandat 1819.092 kb on + strandat 1819.092 kb on + strandat 1819.092 kb on + strandat 1819.110 kb on + strandat 1819.324 kb on + strand, within ABZR87_RS08575at 1819.324 kb on + strand, within ABZR87_RS08575at 1819.325 kb on - strand, within ABZR87_RS08575at 1819.325 kb on - strand, within ABZR87_RS08575at 1819.488 kb on + strand, within ABZR87_RS08575at 1819.489 kb on - strand, within ABZR87_RS08575at 1819.704 kb on + strandat 1819.704 kb on + strandat 1819.704 kb on + strandat 1819.704 kb on + strandat 1819.705 kb on - strandat 1819.705 kb on - strandat 1819.705 kb on - strandat 1819.709 kb on + strandat 1819.721 kb on + strandat 1819.722 kb on - strandat 1819.722 kb on - strandat 1819.722 kb on - strandat 1819.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,818,578 + -0.3
1,818,688 + -0.9
1,818,688 + -1.0
1,818,688 + +0.4
1,818,688 + -0.1
1,818,688 + +0.5
1,818,691 + -0.1
1,818,691 + -1.1
1,818,962 + -0.1
1,818,962 + +1.4
1,818,962 + +1.3
1,818,963 - -0.2
1,818,963 - -1.0
1,818,963 - +0.1
1,819,047 + +0.6
1,819,047 + -0.4
1,819,047 + -0.3
1,819,047 + +1.4
1,819,047 + -0.2
1,819,048 - -1.3
1,819,048 - +0.8
1,819,048 - -0.1
1,819,048 - +1.9
1,819,048 - +0.5
1,819,048 - -2.9
1,819,092 + +0.3
1,819,092 + +0.7
1,819,092 + +0.2
1,819,110 + +1.4
1,819,324 + ABZR87_RS08575 0.26 +0.6
1,819,324 + ABZR87_RS08575 0.26 +0.8
1,819,325 - ABZR87_RS08575 0.26 -0.4
1,819,325 - ABZR87_RS08575 0.26 +1.0
1,819,488 + ABZR87_RS08575 0.59 +0.5
1,819,489 - ABZR87_RS08575 0.59 +2.4
1,819,704 + -0.1
1,819,704 + -0.2
1,819,704 + -2.9
1,819,704 + -0.7
1,819,705 - -0.8
1,819,705 - -0.1
1,819,705 - -1.9
1,819,709 + -0.4
1,819,721 + -0.5
1,819,722 - +0.2
1,819,722 - +0.8
1,819,722 - +1.6
1,819,722 - -1.2

Or see this region's nucleotide sequence