Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08160 and ABZR87_RS08165 are separated by 174 nucleotides ABZR87_RS08165 and ABZR87_RS08170 are separated by 27 nucleotides ABZR87_RS08170 and ABZR87_RS08175 are separated by 45 nucleotides
ABZR87_RS08160: ABZR87_RS08160 - MFS transporter, at 1,735,694 to 1,737,016
_RS08160
ABZR87_RS08165: ABZR87_RS08165 - amidase, at 1,737,191 to 1,738,549
_RS08165
ABZR87_RS08170: ABZR87_RS08170 - DUF2848 domain-containing protein, at 1,738,577 to 1,739,254
_RS08170
ABZR87_RS08175: ABZR87_RS08175 - GntR family transcriptional regulator, at 1,739,300 to 1,740,016
_RS08175
Position (kb) 1737
1738
1739 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1736.218 kb on - strand, within ABZR87_RS08160 at 1736.572 kb on - strand, within ABZR87_RS08160 at 1736.641 kb on - strand, within ABZR87_RS08160 at 1736.641 kb on - strand, within ABZR87_RS08160 at 1736.664 kb on + strand, within ABZR87_RS08160 at 1736.664 kb on + strand, within ABZR87_RS08160 at 1736.664 kb on + strand, within ABZR87_RS08160 at 1736.664 kb on + strand, within ABZR87_RS08160 at 1736.664 kb on + strand, within ABZR87_RS08160 at 1736.665 kb on - strand, within ABZR87_RS08160 at 1736.665 kb on - strand, within ABZR87_RS08160 at 1736.772 kb on + strand, within ABZR87_RS08160 at 1736.772 kb on + strand, within ABZR87_RS08160 at 1736.805 kb on + strand, within ABZR87_RS08160 at 1736.934 kb on + strand at 1736.935 kb on - strand at 1737.029 kb on + strand at 1737.029 kb on + strand at 1737.030 kb on - strand at 1737.030 kb on - strand at 1737.106 kb on - strand at 1737.514 kb on - strand, within ABZR87_RS08165 at 1737.514 kb on - strand, within ABZR87_RS08165 at 1737.514 kb on - strand, within ABZR87_RS08165 at 1737.570 kb on + strand, within ABZR87_RS08165 at 1737.571 kb on - strand, within ABZR87_RS08165 at 1737.809 kb on + strand, within ABZR87_RS08165 at 1737.810 kb on - strand, within ABZR87_RS08165 at 1738.416 kb on + strand at 1738.417 kb on - strand at 1738.417 kb on - strand at 1738.608 kb on + strand at 1738.609 kb on - strand at 1738.712 kb on - strand, within ABZR87_RS08170 at 1738.800 kb on + strand, within ABZR87_RS08170 at 1738.935 kb on + strand, within ABZR87_RS08170 at 1738.935 kb on + strand, within ABZR87_RS08170 at 1738.935 kb on + strand, within ABZR87_RS08170 at 1739.001 kb on + strand, within ABZR87_RS08170 at 1739.002 kb on - strand, within ABZR87_RS08170 at 1739.088 kb on + strand, within ABZR87_RS08170 at 1739.088 kb on + strand, within ABZR87_RS08170 at 1739.088 kb on + strand, within ABZR87_RS08170 at 1739.088 kb on + strand, within ABZR87_RS08170 at 1739.088 kb on + strand, within ABZR87_RS08170 at 1739.089 kb on - strand, within ABZR87_RS08170 at 1739.089 kb on - strand, within ABZR87_RS08170 at 1739.089 kb on - strand, within ABZR87_RS08170 at 1739.415 kb on + strand, within ABZR87_RS08175 at 1739.415 kb on + strand, within ABZR87_RS08175 at 1739.415 kb on + strand, within ABZR87_RS08175
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 1,736,218 - ABZR87_RS08160 0.40 -2.0 1,736,572 - ABZR87_RS08160 0.66 +1.2 1,736,641 - ABZR87_RS08160 0.72 -1.2 1,736,641 - ABZR87_RS08160 0.72 -1.5 1,736,664 + ABZR87_RS08160 0.73 -0.2 1,736,664 + ABZR87_RS08160 0.73 +0.6 1,736,664 + ABZR87_RS08160 0.73 +0.8 1,736,664 + ABZR87_RS08160 0.73 +0.7 1,736,664 + ABZR87_RS08160 0.73 +0.9 1,736,665 - ABZR87_RS08160 0.73 +0.2 1,736,665 - ABZR87_RS08160 0.73 -2.8 1,736,772 + ABZR87_RS08160 0.81 -0.4 1,736,772 + ABZR87_RS08160 0.81 +1.3 1,736,805 + ABZR87_RS08160 0.84 +0.3 1,736,934 + +0.4 1,736,935 - -0.1 1,737,029 + -0.3 1,737,029 + +1.3 1,737,030 - -0.1 1,737,030 - -0.1 1,737,106 - -1.6 1,737,514 - ABZR87_RS08165 0.24 -3.2 1,737,514 - ABZR87_RS08165 0.24 +0.1 1,737,514 - ABZR87_RS08165 0.24 -0.2 1,737,570 + ABZR87_RS08165 0.28 -0.8 1,737,571 - ABZR87_RS08165 0.28 +2.1 1,737,809 + ABZR87_RS08165 0.45 -0.0 1,737,810 - ABZR87_RS08165 0.46 +1.5 1,738,416 + -0.9 1,738,417 - +0.8 1,738,417 - -0.5 1,738,608 + +0.0 1,738,609 - -1.0 1,738,712 - ABZR87_RS08170 0.20 +0.9 1,738,800 + ABZR87_RS08170 0.33 -1.1 1,738,935 + ABZR87_RS08170 0.53 +0.6 1,738,935 + ABZR87_RS08170 0.53 +0.5 1,738,935 + ABZR87_RS08170 0.53 -0.9 1,739,001 + ABZR87_RS08170 0.63 +0.8 1,739,002 - ABZR87_RS08170 0.63 +0.9 1,739,088 + ABZR87_RS08170 0.75 +2.0 1,739,088 + ABZR87_RS08170 0.75 +0.8 1,739,088 + ABZR87_RS08170 0.75 +0.8 1,739,088 + ABZR87_RS08170 0.75 -0.9 1,739,088 + ABZR87_RS08170 0.75 -0.1 1,739,089 - ABZR87_RS08170 0.76 -0.1 1,739,089 - ABZR87_RS08170 0.76 +0.8 1,739,089 - ABZR87_RS08170 0.76 +0.5 1,739,415 + ABZR87_RS08175 0.16 +1.4 1,739,415 + ABZR87_RS08175 0.16 +1.4 1,739,415 + ABZR87_RS08175 0.16 -0.5
Or see this region's nucleotide sequence