Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06330

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06320 and ABZR87_RS06325 are separated by 176 nucleotidesABZR87_RS06325 and ABZR87_RS06330 are separated by 184 nucleotidesABZR87_RS06330 and ABZR87_RS06335 are separated by 34 nucleotidesABZR87_RS06335 and ABZR87_RS06340 are separated by 67 nucleotides ABZR87_RS06320: ABZR87_RS06320 - isovaleryl-CoA dehydrogenase, at 1,350,699 to 1,351,880 _RS06320 ABZR87_RS06325: ABZR87_RS06325 - MerR family DNA-binding transcriptional regulator, at 1,352,057 to 1,352,554 _RS06325 ABZR87_RS06330: ABZR87_RS06330 - MBL fold metallo-hydrolase, at 1,352,739 to 1,353,818 _RS06330 ABZR87_RS06335: ABZR87_RS06335 - antibiotic biosynthesis monooxygenase, at 1,353,853 to 1,354,239 _RS06335 ABZR87_RS06340: ABZR87_RS06340 - helical backbone metal receptor, at 1,354,307 to 1,355,152 _RS06340 Position (kb) 1352 1353 1354Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1351.922 kb on + strandat 1351.922 kb on + strandat 1351.922 kb on + strandat 1351.923 kb on - strandat 1351.923 kb on - strandat 1351.923 kb on - strandat 1351.955 kb on + strandat 1351.955 kb on + strandat 1351.955 kb on + strandat 1351.956 kb on - strandat 1351.956 kb on - strandat 1352.001 kb on - strandat 1352.001 kb on - strandat 1352.041 kb on + strandat 1352.042 kb on - strandat 1352.042 kb on - strandat 1352.045 kb on + strandat 1352.045 kb on + strandat 1352.045 kb on + strandat 1352.047 kb on - strandat 1352.259 kb on + strand, within ABZR87_RS06325at 1352.259 kb on + strand, within ABZR87_RS06325at 1352.259 kb on + strand, within ABZR87_RS06325at 1352.259 kb on + strand, within ABZR87_RS06325at 1352.260 kb on - strand, within ABZR87_RS06325at 1352.260 kb on - strand, within ABZR87_RS06325at 1352.260 kb on - strand, within ABZR87_RS06325at 1352.260 kb on - strand, within ABZR87_RS06325at 1352.260 kb on - strand, within ABZR87_RS06325at 1352.352 kb on + strand, within ABZR87_RS06325at 1352.352 kb on + strand, within ABZR87_RS06325at 1352.412 kb on + strand, within ABZR87_RS06325at 1352.412 kb on + strand, within ABZR87_RS06325at 1352.412 kb on + strand, within ABZR87_RS06325at 1352.413 kb on - strand, within ABZR87_RS06325at 1352.413 kb on - strand, within ABZR87_RS06325at 1352.413 kb on - strand, within ABZR87_RS06325at 1352.413 kb on - strand, within ABZR87_RS06325at 1352.468 kb on - strand, within ABZR87_RS06325at 1352.542 kb on + strandat 1352.542 kb on + strandat 1352.543 kb on - strandat 1352.543 kb on - strandat 1352.543 kb on - strandat 1352.554 kb on + strandat 1352.554 kb on + strandat 1352.554 kb on + strandat 1352.555 kb on - strandat 1352.555 kb on - strandat 1352.555 kb on - strandat 1352.555 kb on - strandat 1352.555 kb on - strandat 1352.571 kb on - strandat 1352.571 kb on - strandat 1352.614 kb on + strandat 1352.614 kb on + strandat 1352.614 kb on + strandat 1352.615 kb on - strandat 1352.615 kb on - strandat 1352.626 kb on + strandat 1352.627 kb on - strandat 1352.658 kb on - strandat 1352.766 kb on + strandat 1352.767 kb on - strandat 1352.767 kb on - strandat 1352.767 kb on - strandat 1352.827 kb on - strandat 1353.114 kb on + strand, within ABZR87_RS06330at 1353.115 kb on - strand, within ABZR87_RS06330at 1353.115 kb on - strand, within ABZR87_RS06330at 1353.246 kb on + strand, within ABZR87_RS06330at 1353.246 kb on + strand, within ABZR87_RS06330at 1353.247 kb on - strand, within ABZR87_RS06330at 1353.249 kb on + strand, within ABZR87_RS06330at 1353.249 kb on + strand, within ABZR87_RS06330at 1353.249 kb on + strand, within ABZR87_RS06330at 1353.250 kb on - strand, within ABZR87_RS06330at 1353.250 kb on - strand, within ABZR87_RS06330at 1353.378 kb on + strand, within ABZR87_RS06330at 1353.379 kb on - strand, within ABZR87_RS06330at 1353.486 kb on + strand, within ABZR87_RS06330at 1353.486 kb on + strand, within ABZR87_RS06330at 1353.486 kb on + strand, within ABZR87_RS06330at 1353.487 kb on - strand, within ABZR87_RS06330at 1353.487 kb on - strand, within ABZR87_RS06330at 1353.507 kb on + strand, within ABZR87_RS06330at 1353.507 kb on + strand, within ABZR87_RS06330at 1353.508 kb on - strand, within ABZR87_RS06330at 1353.508 kb on - strand, within ABZR87_RS06330at 1353.572 kb on + strand, within ABZR87_RS06330at 1353.572 kb on + strand, within ABZR87_RS06330at 1353.573 kb on - strand, within ABZR87_RS06330at 1353.792 kb on - strandat 1353.816 kb on + strandat 1353.816 kb on + strandat 1353.816 kb on + strandat 1353.816 kb on + strandat 1353.816 kb on + strandat 1353.929 kb on - strand, within ABZR87_RS06335at 1353.931 kb on + strand, within ABZR87_RS06335at 1353.931 kb on + strand, within ABZR87_RS06335at 1353.932 kb on - strand, within ABZR87_RS06335at 1353.932 kb on - strand, within ABZR87_RS06335at 1353.996 kb on + strand, within ABZR87_RS06335at 1354.096 kb on + strand, within ABZR87_RS06335at 1354.096 kb on + strand, within ABZR87_RS06335at 1354.097 kb on - strand, within ABZR87_RS06335at 1354.097 kb on - strand, within ABZR87_RS06335at 1354.180 kb on + strand, within ABZR87_RS06335at 1354.180 kb on + strand, within ABZR87_RS06335at 1354.180 kb on + strand, within ABZR87_RS06335at 1354.180 kb on + strand, within ABZR87_RS06335at 1354.180 kb on + strand, within ABZR87_RS06335at 1354.181 kb on - strand, within ABZR87_RS06335at 1354.190 kb on - strand, within ABZR87_RS06335at 1354.216 kb on + strandat 1354.216 kb on + strandat 1354.216 kb on + strandat 1354.216 kb on + strandat 1354.217 kb on - strandat 1354.217 kb on - strandat 1354.217 kb on - strandat 1354.217 kb on - strandat 1354.217 kb on - strandat 1354.308 kb on + strandat 1354.308 kb on + strandat 1354.309 kb on - strandat 1354.309 kb on - strandat 1354.339 kb on - strandat 1354.368 kb on + strandat 1354.368 kb on + strandat 1354.398 kb on + strand, within ABZR87_RS06340at 1354.398 kb on + strand, within ABZR87_RS06340at 1354.399 kb on - strand, within ABZR87_RS06340at 1354.399 kb on - strand, within ABZR87_RS06340at 1354.399 kb on - strand, within ABZR87_RS06340at 1354.455 kb on + strand, within ABZR87_RS06340at 1354.455 kb on + strand, within ABZR87_RS06340at 1354.455 kb on + strand, within ABZR87_RS06340at 1354.455 kb on + strand, within ABZR87_RS06340at 1354.455 kb on + strand, within ABZR87_RS06340at 1354.455 kb on + strand, within ABZR87_RS06340at 1354.456 kb on - strand, within ABZR87_RS06340at 1354.456 kb on - strand, within ABZR87_RS06340at 1354.524 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.644 kb on + strand, within ABZR87_RS06340at 1354.645 kb on - strand, within ABZR87_RS06340at 1354.645 kb on - strand, within ABZR87_RS06340at 1354.645 kb on - strand, within ABZR87_RS06340at 1354.645 kb on - strand, within ABZR87_RS06340at 1354.645 kb on - strand, within ABZR87_RS06340at 1354.645 kb on - strand, within ABZR87_RS06340at 1354.645 kb on - strand, within ABZR87_RS06340at 1354.645 kb on - strand, within ABZR87_RS06340at 1354.645 kb on - strand, within ABZR87_RS06340at 1354.649 kb on - strand, within ABZR87_RS06340at 1354.649 kb on - strand, within ABZR87_RS06340at 1354.689 kb on + strand, within ABZR87_RS06340at 1354.689 kb on + strand, within ABZR87_RS06340at 1354.690 kb on - strand, within ABZR87_RS06340at 1354.690 kb on - strand, within ABZR87_RS06340at 1354.690 kb on - strand, within ABZR87_RS06340at 1354.690 kb on - strand, within ABZR87_RS06340at 1354.806 kb on + strand, within ABZR87_RS06340at 1354.806 kb on + strand, within ABZR87_RS06340at 1354.807 kb on - strand, within ABZR87_RS06340at 1354.807 kb on - strand, within ABZR87_RS06340

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,351,922 + +1.0
1,351,922 + +1.2
1,351,922 + +1.2
1,351,923 - +0.7
1,351,923 - +1.2
1,351,923 - -0.4
1,351,955 + +0.3
1,351,955 + +0.9
1,351,955 + -0.1
1,351,956 - +1.5
1,351,956 - -0.3
1,352,001 - +0.3
1,352,001 - +1.2
1,352,041 + +1.2
1,352,042 - +0.2
1,352,042 - -0.0
1,352,045 + -3.8
1,352,045 + +0.6
1,352,045 + -1.1
1,352,047 - +0.2
1,352,259 + ABZR87_RS06325 0.41 -1.4
1,352,259 + ABZR87_RS06325 0.41 -3.7
1,352,259 + ABZR87_RS06325 0.41 +1.1
1,352,259 + ABZR87_RS06325 0.41 -1.3
1,352,260 - ABZR87_RS06325 0.41 -0.1
1,352,260 - ABZR87_RS06325 0.41 -0.2
1,352,260 - ABZR87_RS06325 0.41 -3.4
1,352,260 - ABZR87_RS06325 0.41 -0.9
1,352,260 - ABZR87_RS06325 0.41 +0.1
1,352,352 + ABZR87_RS06325 0.59 -0.7
1,352,352 + ABZR87_RS06325 0.59 -0.9
1,352,412 + ABZR87_RS06325 0.71 -2.9
1,352,412 + ABZR87_RS06325 0.71 +0.5
1,352,412 + ABZR87_RS06325 0.71 -2.8
1,352,413 - ABZR87_RS06325 0.71 -0.7
1,352,413 - ABZR87_RS06325 0.71 +1.2
1,352,413 - ABZR87_RS06325 0.71 -2.1
1,352,413 - ABZR87_RS06325 0.71 -0.5
1,352,468 - ABZR87_RS06325 0.83 +0.2
1,352,542 + +0.7
1,352,542 + -0.8
1,352,543 - -1.1
1,352,543 - -0.3
1,352,543 - -0.3
1,352,554 + -1.1
1,352,554 + -3.1
1,352,554 + +0.3
1,352,555 - -0.2
1,352,555 - -0.1
1,352,555 - +0.4
1,352,555 - +0.2
1,352,555 - +0.4
1,352,571 - +0.7
1,352,571 - -0.0
1,352,614 + +0.4
1,352,614 + -0.8
1,352,614 + -1.6
1,352,615 - -2.3
1,352,615 - -0.9
1,352,626 + -0.4
1,352,627 - -3.4
1,352,658 - -0.8
1,352,766 + -0.3
1,352,767 - +0.2
1,352,767 - -0.4
1,352,767 - +0.4
1,352,827 - -0.1
1,353,114 + ABZR87_RS06330 0.35 -0.5
1,353,115 - ABZR87_RS06330 0.35 -0.7
1,353,115 - ABZR87_RS06330 0.35 +0.4
1,353,246 + ABZR87_RS06330 0.47 +0.5
1,353,246 + ABZR87_RS06330 0.47 +0.6
1,353,247 - ABZR87_RS06330 0.47 -1.1
1,353,249 + ABZR87_RS06330 0.47 +0.7
1,353,249 + ABZR87_RS06330 0.47 +1.9
1,353,249 + ABZR87_RS06330 0.47 -0.3
1,353,250 - ABZR87_RS06330 0.47 -0.6
1,353,250 - ABZR87_RS06330 0.47 -0.1
1,353,378 + ABZR87_RS06330 0.59 -1.8
1,353,379 - ABZR87_RS06330 0.59 -1.1
1,353,486 + ABZR87_RS06330 0.69 +0.2
1,353,486 + ABZR87_RS06330 0.69 -0.9
1,353,486 + ABZR87_RS06330 0.69 -0.1
1,353,487 - ABZR87_RS06330 0.69 +0.2
1,353,487 - ABZR87_RS06330 0.69 +0.3
1,353,507 + ABZR87_RS06330 0.71 +1.0
1,353,507 + ABZR87_RS06330 0.71 +1.7
1,353,508 - ABZR87_RS06330 0.71 -1.1
1,353,508 - ABZR87_RS06330 0.71 -3.1
1,353,572 + ABZR87_RS06330 0.77 -0.1
1,353,572 + ABZR87_RS06330 0.77 -0.6
1,353,573 - ABZR87_RS06330 0.77 -1.4
1,353,792 - +0.0
1,353,816 + -0.0
1,353,816 + -0.0
1,353,816 + +0.5
1,353,816 + -0.6
1,353,816 + -0.4
1,353,929 - ABZR87_RS06335 0.20 +0.3
1,353,931 + ABZR87_RS06335 0.20 -1.4
1,353,931 + ABZR87_RS06335 0.20 -0.2
1,353,932 - ABZR87_RS06335 0.20 -0.7
1,353,932 - ABZR87_RS06335 0.20 +0.0
1,353,996 + ABZR87_RS06335 0.37 +0.4
1,354,096 + ABZR87_RS06335 0.63 +0.9
1,354,096 + ABZR87_RS06335 0.63 +0.4
1,354,097 - ABZR87_RS06335 0.63 -0.8
1,354,097 - ABZR87_RS06335 0.63 -0.8
1,354,180 + ABZR87_RS06335 0.84 +1.2
1,354,180 + ABZR87_RS06335 0.84 +0.6
1,354,180 + ABZR87_RS06335 0.84 +1.4
1,354,180 + ABZR87_RS06335 0.84 +0.5
1,354,180 + ABZR87_RS06335 0.84 -1.0
1,354,181 - ABZR87_RS06335 0.85 +0.0
1,354,190 - ABZR87_RS06335 0.87 +0.7
1,354,216 + +0.0
1,354,216 + -1.2
1,354,216 + -1.3
1,354,216 + -0.2
1,354,217 - -0.1
1,354,217 - -1.1
1,354,217 - +0.0
1,354,217 - -1.6
1,354,217 - -0.1
1,354,308 + +0.3
1,354,308 + -0.4
1,354,309 - +0.5
1,354,309 - +0.5
1,354,339 - -0.0
1,354,368 + -1.4
1,354,368 + +0.5
1,354,398 + ABZR87_RS06340 0.11 -1.6
1,354,398 + ABZR87_RS06340 0.11 +0.5
1,354,399 - ABZR87_RS06340 0.11 -0.8
1,354,399 - ABZR87_RS06340 0.11 -1.1
1,354,399 - ABZR87_RS06340 0.11 +0.4
1,354,455 + ABZR87_RS06340 0.17 -1.2
1,354,455 + ABZR87_RS06340 0.17 -0.5
1,354,455 + ABZR87_RS06340 0.17 +1.0
1,354,455 + ABZR87_RS06340 0.17 +0.1
1,354,455 + ABZR87_RS06340 0.17 +0.4
1,354,455 + ABZR87_RS06340 0.17 -4.0
1,354,456 - ABZR87_RS06340 0.18 +0.0
1,354,456 - ABZR87_RS06340 0.18 -0.0
1,354,524 + ABZR87_RS06340 0.26 +0.3
1,354,644 + ABZR87_RS06340 0.40 -0.5
1,354,644 + ABZR87_RS06340 0.40 +0.8
1,354,644 + ABZR87_RS06340 0.40 +0.8
1,354,644 + ABZR87_RS06340 0.40 -0.4
1,354,644 + ABZR87_RS06340 0.40 -0.2
1,354,644 + ABZR87_RS06340 0.40 -0.5
1,354,644 + ABZR87_RS06340 0.40 +1.0
1,354,644 + ABZR87_RS06340 0.40 -1.1
1,354,644 + ABZR87_RS06340 0.40 +0.4
1,354,644 + ABZR87_RS06340 0.40 -0.6
1,354,644 + ABZR87_RS06340 0.40 +1.7
1,354,644 + ABZR87_RS06340 0.40 +0.3
1,354,644 + ABZR87_RS06340 0.40 +2.1
1,354,644 + ABZR87_RS06340 0.40 +1.3
1,354,644 + ABZR87_RS06340 0.40 -1.2
1,354,644 + ABZR87_RS06340 0.40 +0.9
1,354,645 - ABZR87_RS06340 0.40 +1.0
1,354,645 - ABZR87_RS06340 0.40 +1.7
1,354,645 - ABZR87_RS06340 0.40 +0.6
1,354,645 - ABZR87_RS06340 0.40 +0.2
1,354,645 - ABZR87_RS06340 0.40 -0.4
1,354,645 - ABZR87_RS06340 0.40 -1.2
1,354,645 - ABZR87_RS06340 0.40 -0.2
1,354,645 - ABZR87_RS06340 0.40 -0.7
1,354,645 - ABZR87_RS06340 0.40 -0.1
1,354,649 - ABZR87_RS06340 0.40 +0.5
1,354,649 - ABZR87_RS06340 0.40 -0.1
1,354,689 + ABZR87_RS06340 0.45 -0.3
1,354,689 + ABZR87_RS06340 0.45 +0.2
1,354,690 - ABZR87_RS06340 0.45 -0.5
1,354,690 - ABZR87_RS06340 0.45 -1.2
1,354,690 - ABZR87_RS06340 0.45 -1.4
1,354,690 - ABZR87_RS06340 0.45 -1.0
1,354,806 + ABZR87_RS06340 0.59 +0.7
1,354,806 + ABZR87_RS06340 0.59 -0.8
1,354,807 - ABZR87_RS06340 0.59 +0.7
1,354,807 - ABZR87_RS06340 0.59 -1.1

Or see this region's nucleotide sequence