Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06070

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06060 and ABZR87_RS06065 are separated by 1 nucleotidesABZR87_RS06065 and ABZR87_RS06070 are separated by 2 nucleotidesABZR87_RS06070 and ABZR87_RS06075 are separated by 77 nucleotides ABZR87_RS06060: ABZR87_RS06060 - ABC transporter permease, at 1,294,326 to 1,295,222 _RS06060 ABZR87_RS06065: ABZR87_RS06065 - ABC transporter permease, at 1,295,224 to 1,296,177 _RS06065 ABZR87_RS06070: ABZR87_RS06070 - extracellular solute-binding protein, at 1,296,180 to 1,297,445 _RS06070 ABZR87_RS06075: ABZR87_RS06075 - ABC transporter ATP-binding protein, at 1,297,523 to 1,298,581 _RS06075 Position (kb) 1296 1297 1298Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1295.541 kb on + strand, within ABZR87_RS06065at 1295.542 kb on - strand, within ABZR87_RS06065at 1295.585 kb on + strand, within ABZR87_RS06065at 1295.585 kb on + strand, within ABZR87_RS06065at 1295.585 kb on + strand, within ABZR87_RS06065at 1295.586 kb on - strand, within ABZR87_RS06065at 1295.586 kb on - strand, within ABZR87_RS06065at 1295.586 kb on - strand, within ABZR87_RS06065at 1295.586 kb on - strand, within ABZR87_RS06065at 1295.586 kb on - strand, within ABZR87_RS06065at 1295.586 kb on - strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.598 kb on - strand, within ABZR87_RS06065at 1295.598 kb on - strand, within ABZR87_RS06065at 1295.598 kb on - strand, within ABZR87_RS06065at 1295.598 kb on - strand, within ABZR87_RS06065at 1295.624 kb on + strand, within ABZR87_RS06065at 1295.624 kb on + strand, within ABZR87_RS06065at 1295.624 kb on + strand, within ABZR87_RS06065at 1295.882 kb on + strand, within ABZR87_RS06065at 1295.882 kb on + strand, within ABZR87_RS06065at 1295.883 kb on - strand, within ABZR87_RS06065at 1295.883 kb on - strand, within ABZR87_RS06065at 1295.883 kb on - strand, within ABZR87_RS06065at 1295.883 kb on - strand, within ABZR87_RS06065at 1295.883 kb on - strand, within ABZR87_RS06065at 1295.913 kb on - strand, within ABZR87_RS06065at 1295.951 kb on + strand, within ABZR87_RS06065at 1295.951 kb on + strand, within ABZR87_RS06065at 1295.951 kb on + strand, within ABZR87_RS06065at 1296.217 kb on + strandat 1296.217 kb on + strandat 1296.217 kb on + strandat 1296.217 kb on + strandat 1296.217 kb on + strandat 1296.217 kb on + strandat 1296.218 kb on - strandat 1296.218 kb on - strandat 1296.274 kb on + strandat 1296.274 kb on + strandat 1296.274 kb on + strandat 1296.274 kb on + strandat 1296.275 kb on - strandat 1296.367 kb on + strand, within ABZR87_RS06070at 1296.368 kb on - strand, within ABZR87_RS06070at 1296.379 kb on + strand, within ABZR87_RS06070at 1296.421 kb on + strand, within ABZR87_RS06070at 1296.422 kb on - strand, within ABZR87_RS06070at 1296.422 kb on - strand, within ABZR87_RS06070at 1296.424 kb on + strand, within ABZR87_RS06070at 1296.425 kb on - strand, within ABZR87_RS06070at 1296.442 kb on + strand, within ABZR87_RS06070at 1296.442 kb on + strand, within ABZR87_RS06070at 1296.443 kb on - strand, within ABZR87_RS06070at 1296.484 kb on + strand, within ABZR87_RS06070at 1296.550 kb on + strand, within ABZR87_RS06070at 1296.775 kb on + strand, within ABZR87_RS06070at 1296.775 kb on + strand, within ABZR87_RS06070at 1296.776 kb on - strand, within ABZR87_RS06070at 1296.776 kb on - strand, within ABZR87_RS06070at 1296.776 kb on - strand, within ABZR87_RS06070at 1296.943 kb on + strand, within ABZR87_RS06070at 1296.944 kb on - strand, within ABZR87_RS06070at 1296.944 kb on - strand, within ABZR87_RS06070at 1297.015 kb on + strand, within ABZR87_RS06070at 1297.015 kb on + strand, within ABZR87_RS06070at 1297.016 kb on - strand, within ABZR87_RS06070at 1297.016 kb on - strand, within ABZR87_RS06070at 1297.016 kb on - strand, within ABZR87_RS06070at 1297.016 kb on - strand, within ABZR87_RS06070at 1297.171 kb on + strand, within ABZR87_RS06070at 1297.171 kb on + strand, within ABZR87_RS06070at 1297.171 kb on + strand, within ABZR87_RS06070at 1297.172 kb on - strand, within ABZR87_RS06070at 1297.249 kb on + strand, within ABZR87_RS06070at 1297.249 kb on + strand, within ABZR87_RS06070at 1297.249 kb on + strand, within ABZR87_RS06070at 1297.250 kb on - strand, within ABZR87_RS06070at 1297.250 kb on - strand, within ABZR87_RS06070at 1297.324 kb on + strandat 1297.325 kb on - strandat 1297.325 kb on - strandat 1297.362 kb on + strandat 1297.362 kb on + strandat 1297.363 kb on - strandat 1297.702 kb on - strand, within ABZR87_RS06075at 1297.869 kb on + strand, within ABZR87_RS06075at 1297.869 kb on + strand, within ABZR87_RS06075at 1297.869 kb on + strand, within ABZR87_RS06075at 1297.870 kb on - strand, within ABZR87_RS06075at 1298.283 kb on + strand, within ABZR87_RS06075at 1298.283 kb on + strand, within ABZR87_RS06075at 1298.283 kb on + strand, within ABZR87_RS06075at 1298.283 kb on + strand, within ABZR87_RS06075at 1298.283 kb on + strand, within ABZR87_RS06075at 1298.284 kb on - strand, within ABZR87_RS06075at 1298.284 kb on - strand, within ABZR87_RS06075at 1298.442 kb on + strand, within ABZR87_RS06075at 1298.442 kb on + strand, within ABZR87_RS06075at 1298.443 kb on - strand, within ABZR87_RS06075at 1298.443 kb on - strand, within ABZR87_RS06075

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,295,541 + ABZR87_RS06065 0.33 +0.3
1,295,542 - ABZR87_RS06065 0.33 +0.1
1,295,585 + ABZR87_RS06065 0.38 -0.9
1,295,585 + ABZR87_RS06065 0.38 +0.5
1,295,585 + ABZR87_RS06065 0.38 +0.1
1,295,586 - ABZR87_RS06065 0.38 +1.0
1,295,586 - ABZR87_RS06065 0.38 +0.2
1,295,586 - ABZR87_RS06065 0.38 +1.7
1,295,586 - ABZR87_RS06065 0.38 -0.5
1,295,586 - ABZR87_RS06065 0.38 -2.7
1,295,586 - ABZR87_RS06065 0.38 -0.1
1,295,597 + ABZR87_RS06065 0.39 +1.2
1,295,597 + ABZR87_RS06065 0.39 -2.1
1,295,597 + ABZR87_RS06065 0.39 -0.5
1,295,597 + ABZR87_RS06065 0.39 +0.3
1,295,597 + ABZR87_RS06065 0.39 -1.3
1,295,597 + ABZR87_RS06065 0.39 +1.9
1,295,597 + ABZR87_RS06065 0.39 +0.4
1,295,597 + ABZR87_RS06065 0.39 -0.2
1,295,597 + ABZR87_RS06065 0.39 -0.9
1,295,598 - ABZR87_RS06065 0.39 +0.7
1,295,598 - ABZR87_RS06065 0.39 +2.0
1,295,598 - ABZR87_RS06065 0.39 +2.6
1,295,598 - ABZR87_RS06065 0.39 +0.8
1,295,624 + ABZR87_RS06065 0.42 -1.2
1,295,624 + ABZR87_RS06065 0.42 +1.0
1,295,624 + ABZR87_RS06065 0.42 +0.5
1,295,882 + ABZR87_RS06065 0.69 -0.2
1,295,882 + ABZR87_RS06065 0.69 +0.5
1,295,883 - ABZR87_RS06065 0.69 -0.6
1,295,883 - ABZR87_RS06065 0.69 -0.0
1,295,883 - ABZR87_RS06065 0.69 -2.4
1,295,883 - ABZR87_RS06065 0.69 -0.4
1,295,883 - ABZR87_RS06065 0.69 -0.1
1,295,913 - ABZR87_RS06065 0.72 -1.0
1,295,951 + ABZR87_RS06065 0.76 +0.6
1,295,951 + ABZR87_RS06065 0.76 +0.7
1,295,951 + ABZR87_RS06065 0.76 +0.1
1,296,217 + +0.8
1,296,217 + -0.3
1,296,217 + +1.8
1,296,217 + +0.0
1,296,217 + +0.3
1,296,217 + +0.1
1,296,218 - +0.5
1,296,218 - -0.7
1,296,274 + -2.3
1,296,274 + +0.3
1,296,274 + -0.4
1,296,274 + +1.9
1,296,275 - -2.6
1,296,367 + ABZR87_RS06070 0.15 -2.4
1,296,368 - ABZR87_RS06070 0.15 -2.8
1,296,379 + ABZR87_RS06070 0.16 -0.3
1,296,421 + ABZR87_RS06070 0.19 +0.1
1,296,422 - ABZR87_RS06070 0.19 -0.2
1,296,422 - ABZR87_RS06070 0.19 -0.4
1,296,424 + ABZR87_RS06070 0.19 -2.7
1,296,425 - ABZR87_RS06070 0.19 +0.2
1,296,442 + ABZR87_RS06070 0.21 +0.2
1,296,442 + ABZR87_RS06070 0.21 +1.8
1,296,443 - ABZR87_RS06070 0.21 -0.2
1,296,484 + ABZR87_RS06070 0.24 -2.5
1,296,550 + ABZR87_RS06070 0.29 -0.8
1,296,775 + ABZR87_RS06070 0.47 +0.3
1,296,775 + ABZR87_RS06070 0.47 -0.5
1,296,776 - ABZR87_RS06070 0.47 +0.4
1,296,776 - ABZR87_RS06070 0.47 +1.7
1,296,776 - ABZR87_RS06070 0.47 +0.5
1,296,943 + ABZR87_RS06070 0.60 +0.7
1,296,944 - ABZR87_RS06070 0.60 +0.1
1,296,944 - ABZR87_RS06070 0.60 -0.6
1,297,015 + ABZR87_RS06070 0.66 -0.8
1,297,015 + ABZR87_RS06070 0.66 +0.9
1,297,016 - ABZR87_RS06070 0.66 -2.5
1,297,016 - ABZR87_RS06070 0.66 -1.4
1,297,016 - ABZR87_RS06070 0.66 +0.7
1,297,016 - ABZR87_RS06070 0.66 -1.9
1,297,171 + ABZR87_RS06070 0.78 -0.1
1,297,171 + ABZR87_RS06070 0.78 -0.3
1,297,171 + ABZR87_RS06070 0.78 -0.6
1,297,172 - ABZR87_RS06070 0.78 +0.4
1,297,249 + ABZR87_RS06070 0.84 -2.1
1,297,249 + ABZR87_RS06070 0.84 +1.1
1,297,249 + ABZR87_RS06070 0.84 +0.3
1,297,250 - ABZR87_RS06070 0.85 +0.6
1,297,250 - ABZR87_RS06070 0.85 -3.8
1,297,324 + -1.9
1,297,325 - +0.3
1,297,325 - +0.1
1,297,362 + +0.4
1,297,362 + -0.8
1,297,363 - +1.5
1,297,702 - ABZR87_RS06075 0.17 +0.8
1,297,869 + ABZR87_RS06075 0.33 +0.1
1,297,869 + ABZR87_RS06075 0.33 +1.0
1,297,869 + ABZR87_RS06075 0.33 -2.3
1,297,870 - ABZR87_RS06075 0.33 +0.2
1,298,283 + ABZR87_RS06075 0.72 -3.3
1,298,283 + ABZR87_RS06075 0.72 -1.1
1,298,283 + ABZR87_RS06075 0.72 -0.5
1,298,283 + ABZR87_RS06075 0.72 -2.1
1,298,283 + ABZR87_RS06075 0.72 +1.7
1,298,284 - ABZR87_RS06075 0.72 +0.8
1,298,284 - ABZR87_RS06075 0.72 -0.4
1,298,442 + ABZR87_RS06075 0.87 -0.7
1,298,442 + ABZR87_RS06075 0.87 -0.6
1,298,443 - ABZR87_RS06075 0.87 -0.1
1,298,443 - ABZR87_RS06075 0.87 -0.0

Or see this region's nucleotide sequence