Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05670

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05665 and ABZR87_RS05670 are separated by 86 nucleotidesABZR87_RS05670 and ABZR87_RS05675 are separated by 49 nucleotides ABZR87_RS05665: ABZR87_RS05665 - LysR family transcriptional regulator, at 1,202,959 to 1,203,882 _RS05665 ABZR87_RS05670: ABZR87_RS05670 - TetR/AcrR family transcriptional regulator, at 1,203,969 to 1,204,733 _RS05670 ABZR87_RS05675: ABZR87_RS05675 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,204,783 to 1,205,757 _RS05675 Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1202.980 kb on + strandat 1202.980 kb on + strandat 1202.980 kb on + strandat 1202.980 kb on + strandat 1202.981 kb on - strandat 1202.988 kb on + strandat 1202.988 kb on + strandat 1202.988 kb on + strandat 1202.988 kb on + strandat 1202.989 kb on - strandat 1202.989 kb on - strandat 1202.989 kb on - strandat 1203.067 kb on + strand, within ABZR87_RS05665at 1203.068 kb on - strand, within ABZR87_RS05665at 1203.068 kb on - strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.275 kb on - strand, within ABZR87_RS05665at 1203.275 kb on - strand, within ABZR87_RS05665at 1203.275 kb on - strand, within ABZR87_RS05665at 1203.275 kb on - strand, within ABZR87_RS05665at 1203.338 kb on + strand, within ABZR87_RS05665at 1203.338 kb on + strand, within ABZR87_RS05665at 1203.338 kb on + strand, within ABZR87_RS05665at 1203.338 kb on + strand, within ABZR87_RS05665at 1203.338 kb on + strand, within ABZR87_RS05665at 1203.338 kb on + strand, within ABZR87_RS05665at 1203.339 kb on - strand, within ABZR87_RS05665at 1203.339 kb on - strand, within ABZR87_RS05665at 1203.339 kb on - strand, within ABZR87_RS05665at 1203.339 kb on - strand, within ABZR87_RS05665at 1203.339 kb on - strand, within ABZR87_RS05665at 1203.419 kb on - strand, within ABZR87_RS05665at 1203.460 kb on + strand, within ABZR87_RS05665at 1203.460 kb on + strand, within ABZR87_RS05665at 1203.460 kb on + strand, within ABZR87_RS05665at 1203.461 kb on - strand, within ABZR87_RS05665at 1203.462 kb on + strand, within ABZR87_RS05665at 1203.463 kb on - strand, within ABZR87_RS05665at 1203.560 kb on - strand, within ABZR87_RS05665at 1203.560 kb on - strand, within ABZR87_RS05665at 1203.560 kb on - strand, within ABZR87_RS05665at 1203.560 kb on - strand, within ABZR87_RS05665at 1203.560 kb on - strand, within ABZR87_RS05665at 1203.560 kb on - strand, within ABZR87_RS05665at 1203.580 kb on + strand, within ABZR87_RS05665at 1203.581 kb on - strand, within ABZR87_RS05665at 1203.956 kb on + strandat 1203.957 kb on - strandat 1203.957 kb on - strandat 1203.957 kb on - strandat 1203.959 kb on + strandat 1203.960 kb on - strandat 1204.075 kb on + strand, within ABZR87_RS05670at 1204.075 kb on + strand, within ABZR87_RS05670at 1204.075 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.156 kb on - strand, within ABZR87_RS05670at 1204.156 kb on - strand, within ABZR87_RS05670at 1204.156 kb on - strand, within ABZR87_RS05670at 1204.738 kb on + strandat 1204.738 kb on + strandat 1204.739 kb on - strandat 1204.739 kb on - strandat 1204.739 kb on - strandat 1204.739 kb on - strandat 1204.806 kb on + strandat 1204.882 kb on + strand, within ABZR87_RS05675at 1204.882 kb on + strand, within ABZR87_RS05675at 1204.882 kb on + strand, within ABZR87_RS05675at 1204.882 kb on + strand, within ABZR87_RS05675at 1204.883 kb on - strand, within ABZR87_RS05675at 1204.883 kb on - strand, within ABZR87_RS05675at 1204.883 kb on - strand, within ABZR87_RS05675at 1204.883 kb on - strand, within ABZR87_RS05675at 1204.891 kb on + strand, within ABZR87_RS05675at 1204.891 kb on + strand, within ABZR87_RS05675at 1204.891 kb on + strand, within ABZR87_RS05675at 1204.891 kb on + strand, within ABZR87_RS05675at 1204.891 kb on + strand, within ABZR87_RS05675at 1204.891 kb on + strand, within ABZR87_RS05675at 1204.891 kb on + strand, within ABZR87_RS05675at 1204.892 kb on - strand, within ABZR87_RS05675at 1204.892 kb on - strand, within ABZR87_RS05675at 1204.912 kb on + strand, within ABZR87_RS05675at 1204.912 kb on + strand, within ABZR87_RS05675at 1204.912 kb on + strand, within ABZR87_RS05675at 1204.912 kb on + strand, within ABZR87_RS05675at 1204.913 kb on - strand, within ABZR87_RS05675at 1204.997 kb on + strand, within ABZR87_RS05675at 1204.998 kb on - strand, within ABZR87_RS05675at 1205.434 kb on + strand, within ABZR87_RS05675at 1205.434 kb on + strand, within ABZR87_RS05675at 1205.434 kb on + strand, within ABZR87_RS05675at 1205.608 kb on + strand, within ABZR87_RS05675at 1205.608 kb on + strand, within ABZR87_RS05675at 1205.608 kb on + strand, within ABZR87_RS05675at 1205.608 kb on + strand, within ABZR87_RS05675at 1205.608 kb on + strand, within ABZR87_RS05675at 1205.608 kb on + strand, within ABZR87_RS05675at 1205.608 kb on + strand, within ABZR87_RS05675at 1205.609 kb on - strand, within ABZR87_RS05675at 1205.609 kb on - strand, within ABZR87_RS05675at 1205.609 kb on - strand, within ABZR87_RS05675at 1205.609 kb on - strand, within ABZR87_RS05675at 1205.609 kb on - strand, within ABZR87_RS05675at 1205.609 kb on - strand, within ABZR87_RS05675at 1205.609 kb on - strand, within ABZR87_RS05675at 1205.629 kb on + strand, within ABZR87_RS05675at 1205.629 kb on + strand, within ABZR87_RS05675at 1205.630 kb on - strand, within ABZR87_RS05675at 1205.647 kb on + strand, within ABZR87_RS05675at 1205.647 kb on + strand, within ABZR87_RS05675at 1205.647 kb on + strand, within ABZR87_RS05675at 1205.648 kb on - strand, within ABZR87_RS05675at 1205.648 kb on - strand, within ABZR87_RS05675at 1205.648 kb on - strand, within ABZR87_RS05675at 1205.648 kb on - strand, within ABZR87_RS05675

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,202,980 + +0.5
1,202,980 + -1.4
1,202,980 + -0.1
1,202,980 + -0.6
1,202,981 - +2.2
1,202,988 + -0.1
1,202,988 + +1.1
1,202,988 + +0.0
1,202,988 + +1.8
1,202,989 - +0.6
1,202,989 - +0.4
1,202,989 - +0.3
1,203,067 + ABZR87_RS05665 0.12 +0.5
1,203,068 - ABZR87_RS05665 0.12 -0.7
1,203,068 - ABZR87_RS05665 0.12 -0.1
1,203,274 + ABZR87_RS05665 0.34 -0.6
1,203,274 + ABZR87_RS05665 0.34 -0.7
1,203,274 + ABZR87_RS05665 0.34 -0.4
1,203,274 + ABZR87_RS05665 0.34 +0.6
1,203,274 + ABZR87_RS05665 0.34 -1.9
1,203,274 + ABZR87_RS05665 0.34 +1.7
1,203,274 + ABZR87_RS05665 0.34 +0.6
1,203,274 + ABZR87_RS05665 0.34 +1.0
1,203,274 + ABZR87_RS05665 0.34 +0.0
1,203,274 + ABZR87_RS05665 0.34 +0.8
1,203,274 + ABZR87_RS05665 0.34 +0.6
1,203,274 + ABZR87_RS05665 0.34 +1.0
1,203,275 - ABZR87_RS05665 0.34 -0.1
1,203,275 - ABZR87_RS05665 0.34 -1.4
1,203,275 - ABZR87_RS05665 0.34 -0.9
1,203,275 - ABZR87_RS05665 0.34 +0.2
1,203,338 + ABZR87_RS05665 0.41 -0.7
1,203,338 + ABZR87_RS05665 0.41 +2.6
1,203,338 + ABZR87_RS05665 0.41 +0.2
1,203,338 + ABZR87_RS05665 0.41 -0.1
1,203,338 + ABZR87_RS05665 0.41 +0.3
1,203,338 + ABZR87_RS05665 0.41 -0.3
1,203,339 - ABZR87_RS05665 0.41 -0.0
1,203,339 - ABZR87_RS05665 0.41 +0.3
1,203,339 - ABZR87_RS05665 0.41 -0.1
1,203,339 - ABZR87_RS05665 0.41 +1.2
1,203,339 - ABZR87_RS05665 0.41 -0.7
1,203,419 - ABZR87_RS05665 0.50 -1.3
1,203,460 + ABZR87_RS05665 0.54 +0.9
1,203,460 + ABZR87_RS05665 0.54 -1.2
1,203,460 + ABZR87_RS05665 0.54 -0.5
1,203,461 - ABZR87_RS05665 0.54 -4.1
1,203,462 + ABZR87_RS05665 0.54 -2.2
1,203,463 - ABZR87_RS05665 0.55 +1.4
1,203,560 - ABZR87_RS05665 0.65 -0.7
1,203,560 - ABZR87_RS05665 0.65 +0.5
1,203,560 - ABZR87_RS05665 0.65 -0.0
1,203,560 - ABZR87_RS05665 0.65 +0.1
1,203,560 - ABZR87_RS05665 0.65 -0.3
1,203,560 - ABZR87_RS05665 0.65 +0.1
1,203,580 + ABZR87_RS05665 0.67 -0.7
1,203,581 - ABZR87_RS05665 0.67 -1.4
1,203,956 + -0.7
1,203,957 - -1.8
1,203,957 - +0.2
1,203,957 - +0.3
1,203,959 + -2.1
1,203,960 - +1.7
1,204,075 + ABZR87_RS05670 0.14 -0.1
1,204,075 + ABZR87_RS05670 0.14 +0.9
1,204,075 + ABZR87_RS05670 0.14 -1.3
1,204,155 + ABZR87_RS05670 0.24 +0.4
1,204,155 + ABZR87_RS05670 0.24 -1.4
1,204,155 + ABZR87_RS05670 0.24 +0.8
1,204,155 + ABZR87_RS05670 0.24 -0.8
1,204,155 + ABZR87_RS05670 0.24 -0.3
1,204,155 + ABZR87_RS05670 0.24 -2.1
1,204,155 + ABZR87_RS05670 0.24 -0.4
1,204,155 + ABZR87_RS05670 0.24 -0.6
1,204,156 - ABZR87_RS05670 0.24 -0.4
1,204,156 - ABZR87_RS05670 0.24 -1.2
1,204,156 - ABZR87_RS05670 0.24 +0.3
1,204,738 + -2.4
1,204,738 + +0.4
1,204,739 - +0.4
1,204,739 - +0.4
1,204,739 - +0.6
1,204,739 - +0.7
1,204,806 + +0.4
1,204,882 + ABZR87_RS05675 0.10 -0.6
1,204,882 + ABZR87_RS05675 0.10 +0.3
1,204,882 + ABZR87_RS05675 0.10 -0.5
1,204,882 + ABZR87_RS05675 0.10 -0.3
1,204,883 - ABZR87_RS05675 0.10 +1.8
1,204,883 - ABZR87_RS05675 0.10 +0.7
1,204,883 - ABZR87_RS05675 0.10 -0.8
1,204,883 - ABZR87_RS05675 0.10 -1.4
1,204,891 + ABZR87_RS05675 0.11 +1.2
1,204,891 + ABZR87_RS05675 0.11 +0.4
1,204,891 + ABZR87_RS05675 0.11 +0.6
1,204,891 + ABZR87_RS05675 0.11 +1.0
1,204,891 + ABZR87_RS05675 0.11 -0.4
1,204,891 + ABZR87_RS05675 0.11 +0.5
1,204,891 + ABZR87_RS05675 0.11 -0.2
1,204,892 - ABZR87_RS05675 0.11 +1.0
1,204,892 - ABZR87_RS05675 0.11 +1.3
1,204,912 + ABZR87_RS05675 0.13 -3.9
1,204,912 + ABZR87_RS05675 0.13 -0.5
1,204,912 + ABZR87_RS05675 0.13 +0.1
1,204,912 + ABZR87_RS05675 0.13 -1.1
1,204,913 - ABZR87_RS05675 0.13 +0.2
1,204,997 + ABZR87_RS05675 0.22 -0.8
1,204,998 - ABZR87_RS05675 0.22 -2.8
1,205,434 + ABZR87_RS05675 0.67 -1.4
1,205,434 + ABZR87_RS05675 0.67 +0.3
1,205,434 + ABZR87_RS05675 0.67 -1.3
1,205,608 + ABZR87_RS05675 0.85 +0.2
1,205,608 + ABZR87_RS05675 0.85 +0.4
1,205,608 + ABZR87_RS05675 0.85 +0.7
1,205,608 + ABZR87_RS05675 0.85 -2.1
1,205,608 + ABZR87_RS05675 0.85 -1.1
1,205,608 + ABZR87_RS05675 0.85 -2.2
1,205,608 + ABZR87_RS05675 0.85 -1.9
1,205,609 - ABZR87_RS05675 0.85 -0.5
1,205,609 - ABZR87_RS05675 0.85 +0.0
1,205,609 - ABZR87_RS05675 0.85 +0.4
1,205,609 - ABZR87_RS05675 0.85 +0.3
1,205,609 - ABZR87_RS05675 0.85 +0.6
1,205,609 - ABZR87_RS05675 0.85 +0.4
1,205,609 - ABZR87_RS05675 0.85 +0.5
1,205,629 + ABZR87_RS05675 0.87 +1.1
1,205,629 + ABZR87_RS05675 0.87 +1.2
1,205,630 - ABZR87_RS05675 0.87 +0.4
1,205,647 + ABZR87_RS05675 0.89 +0.5
1,205,647 + ABZR87_RS05675 0.89 +1.2
1,205,647 + ABZR87_RS05675 0.89 +0.3
1,205,648 - ABZR87_RS05675 0.89 -0.5
1,205,648 - ABZR87_RS05675 0.89 -3.8
1,205,648 - ABZR87_RS05675 0.89 -2.2
1,205,648 - ABZR87_RS05675 0.89 +0.6

Or see this region's nucleotide sequence