Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02580

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02575 and ABZR87_RS02580 are separated by 248 nucleotidesABZR87_RS02580 and ABZR87_RS02585 are separated by 215 nucleotides ABZR87_RS02575: ABZR87_RS02575 - transposase, at 547,744 to 548,469 _RS02575 ABZR87_RS02580: ABZR87_RS02580 - OmpW family protein, at 548,718 to 549,392 _RS02580 ABZR87_RS02585: ABZR87_RS02585 - deoxyguanosinetriphosphate triphosphohydrolase, at 549,608 to 550,774 _RS02585 Position (kb) 548 549 550Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 547.745 kb on + strandat 547.909 kb on + strand, within ABZR87_RS02575at 547.909 kb on + strand, within ABZR87_RS02575at 547.992 kb on - strand, within ABZR87_RS02575at 547.997 kb on + strand, within ABZR87_RS02575at 547.997 kb on + strand, within ABZR87_RS02575at 547.997 kb on + strand, within ABZR87_RS02575at 547.997 kb on + strand, within ABZR87_RS02575at 547.998 kb on - strand, within ABZR87_RS02575at 547.998 kb on - strand, within ABZR87_RS02575at 548.045 kb on + strand, within ABZR87_RS02575at 548.045 kb on + strand, within ABZR87_RS02575at 548.045 kb on + strand, within ABZR87_RS02575at 548.045 kb on + strand, within ABZR87_RS02575at 548.045 kb on + strand, within ABZR87_RS02575at 548.045 kb on + strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.150 kb on - strand, within ABZR87_RS02575at 548.211 kb on - strand, within ABZR87_RS02575at 548.211 kb on - strand, within ABZR87_RS02575at 548.217 kb on + strand, within ABZR87_RS02575at 548.217 kb on + strand, within ABZR87_RS02575at 548.217 kb on + strand, within ABZR87_RS02575at 548.217 kb on + strand, within ABZR87_RS02575at 548.217 kb on + strand, within ABZR87_RS02575at 548.218 kb on - strand, within ABZR87_RS02575at 548.219 kb on + strand, within ABZR87_RS02575at 548.220 kb on - strand, within ABZR87_RS02575at 548.220 kb on - strand, within ABZR87_RS02575at 548.363 kb on + strand, within ABZR87_RS02575at 548.363 kb on + strand, within ABZR87_RS02575at 548.364 kb on - strand, within ABZR87_RS02575at 548.372 kb on + strand, within ABZR87_RS02575at 548.372 kb on + strand, within ABZR87_RS02575at 548.373 kb on - strand, within ABZR87_RS02575at 548.373 kb on - strand, within ABZR87_RS02575at 548.373 kb on - strand, within ABZR87_RS02575at 548.501 kb on + strandat 548.870 kb on + strand, within ABZR87_RS02580at 548.870 kb on + strand, within ABZR87_RS02580at 548.870 kb on + strand, within ABZR87_RS02580at 548.871 kb on - strand, within ABZR87_RS02580at 548.871 kb on - strand, within ABZR87_RS02580at 548.871 kb on - strand, within ABZR87_RS02580at 548.948 kb on + strand, within ABZR87_RS02580at 548.949 kb on - strand, within ABZR87_RS02580at 548.949 kb on - strand, within ABZR87_RS02580at 548.949 kb on - strand, within ABZR87_RS02580at 548.949 kb on - strand, within ABZR87_RS02580at 548.955 kb on + strand, within ABZR87_RS02580at 548.955 kb on + strand, within ABZR87_RS02580at 548.955 kb on + strand, within ABZR87_RS02580at 548.955 kb on + strand, within ABZR87_RS02580at 548.956 kb on - strand, within ABZR87_RS02580at 548.956 kb on - strand, within ABZR87_RS02580at 548.956 kb on - strand, within ABZR87_RS02580at 548.956 kb on - strand, within ABZR87_RS02580at 548.998 kb on - strand, within ABZR87_RS02580at 549.096 kb on + strand, within ABZR87_RS02580at 549.097 kb on - strand, within ABZR87_RS02580at 549.097 kb on - strand, within ABZR87_RS02580at 549.129 kb on + strand, within ABZR87_RS02580at 549.129 kb on + strand, within ABZR87_RS02580at 549.130 kb on - strand, within ABZR87_RS02580at 549.130 kb on - strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.151 kb on - strand, within ABZR87_RS02580at 549.151 kb on - strand, within ABZR87_RS02580at 549.151 kb on - strand, within ABZR87_RS02580at 549.209 kb on + strand, within ABZR87_RS02580at 549.209 kb on + strand, within ABZR87_RS02580at 549.209 kb on + strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.249 kb on + strand, within ABZR87_RS02580at 549.270 kb on + strand, within ABZR87_RS02580at 549.271 kb on - strand, within ABZR87_RS02580at 549.271 kb on - strand, within ABZR87_RS02580at 549.271 kb on - strand, within ABZR87_RS02580at 549.391 kb on - strandat 549.391 kb on - strandat 549.434 kb on + strandat 549.434 kb on + strandat 549.434 kb on + strandat 549.546 kb on - strandat 549.573 kb on + strandat 549.573 kb on + strandat 549.573 kb on + strandat 549.573 kb on + strandat 549.573 kb on + strandat 549.574 kb on - strandat 549.585 kb on + strandat 549.654 kb on + strandat 549.678 kb on + strandat 549.678 kb on + strandat 549.678 kb on + strandat 549.678 kb on + strandat 549.678 kb on + strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.726 kb on + strand, within ABZR87_RS02585at 549.727 kb on - strand, within ABZR87_RS02585at 549.727 kb on - strand, within ABZR87_RS02585at 549.819 kb on + strand, within ABZR87_RS02585at 549.819 kb on + strand, within ABZR87_RS02585at 549.819 kb on + strand, within ABZR87_RS02585at 549.820 kb on - strand, within ABZR87_RS02585at 549.820 kb on - strand, within ABZR87_RS02585at 549.828 kb on + strand, within ABZR87_RS02585at 549.829 kb on - strand, within ABZR87_RS02585at 549.835 kb on + strand, within ABZR87_RS02585at 549.925 kb on + strand, within ABZR87_RS02585at 549.925 kb on + strand, within ABZR87_RS02585at 549.926 kb on - strand, within ABZR87_RS02585at 549.926 kb on - strand, within ABZR87_RS02585at 550.139 kb on - strand, within ABZR87_RS02585at 550.152 kb on + strand, within ABZR87_RS02585at 550.152 kb on + strand, within ABZR87_RS02585at 550.152 kb on + strand, within ABZR87_RS02585at 550.152 kb on + strand, within ABZR87_RS02585at 550.153 kb on - strand, within ABZR87_RS02585at 550.153 kb on - strand, within ABZR87_RS02585at 550.153 kb on - strand, within ABZR87_RS02585at 550.249 kb on + strand, within ABZR87_RS02585at 550.249 kb on + strand, within ABZR87_RS02585at 550.249 kb on + strand, within ABZR87_RS02585at 550.321 kb on - strand, within ABZR87_RS02585at 550.381 kb on - strand, within ABZR87_RS02585

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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547,745 + +0.5
547,909 + ABZR87_RS02575 0.23 -0.3
547,909 + ABZR87_RS02575 0.23 -3.8
547,992 - ABZR87_RS02575 0.34 +0.9
547,997 + ABZR87_RS02575 0.35 -2.3
547,997 + ABZR87_RS02575 0.35 -3.0
547,997 + ABZR87_RS02575 0.35 -4.5
547,997 + ABZR87_RS02575 0.35 -4.7
547,998 - ABZR87_RS02575 0.35 +1.5
547,998 - ABZR87_RS02575 0.35 -0.1
548,045 + ABZR87_RS02575 0.41 -3.7
548,045 + ABZR87_RS02575 0.41 -3.8
548,045 + ABZR87_RS02575 0.41 -2.3
548,045 + ABZR87_RS02575 0.41 -2.5
548,045 + ABZR87_RS02575 0.41 -0.7
548,045 + ABZR87_RS02575 0.41 -3.0
548,046 - ABZR87_RS02575 0.42 +0.5
548,046 - ABZR87_RS02575 0.42 -0.3
548,046 - ABZR87_RS02575 0.42 +1.3
548,046 - ABZR87_RS02575 0.42 +0.1
548,046 - ABZR87_RS02575 0.42 +0.3
548,046 - ABZR87_RS02575 0.42 -2.3
548,046 - ABZR87_RS02575 0.42 +2.5
548,111 + ABZR87_RS02575 0.51 -3.9
548,111 + ABZR87_RS02575 0.51 -2.5
548,111 + ABZR87_RS02575 0.51 -5.6
548,111 + ABZR87_RS02575 0.51 -3.3
548,111 + ABZR87_RS02575 0.51 -1.9
548,111 + ABZR87_RS02575 0.51 -1.0
548,111 + ABZR87_RS02575 0.51 -3.5
548,112 - ABZR87_RS02575 0.51 -0.3
548,112 - ABZR87_RS02575 0.51 +0.2
548,112 - ABZR87_RS02575 0.51 +0.6
548,112 - ABZR87_RS02575 0.51 +0.3
548,112 - ABZR87_RS02575 0.51 +0.1
548,112 - ABZR87_RS02575 0.51 +0.4
548,112 - ABZR87_RS02575 0.51 -1.0
548,150 - ABZR87_RS02575 0.56 -0.1
548,211 - ABZR87_RS02575 0.64 -0.8
548,211 - ABZR87_RS02575 0.64 -1.7
548,217 + ABZR87_RS02575 0.65 -4.4
548,217 + ABZR87_RS02575 0.65 -3.2
548,217 + ABZR87_RS02575 0.65 -4.0
548,217 + ABZR87_RS02575 0.65 -3.6
548,217 + ABZR87_RS02575 0.65 -4.6
548,218 - ABZR87_RS02575 0.65 +0.5
548,219 + ABZR87_RS02575 0.65 -3.5
548,220 - ABZR87_RS02575 0.66 -1.3
548,220 - ABZR87_RS02575 0.66 +0.9
548,363 + ABZR87_RS02575 0.85 -4.9
548,363 + ABZR87_RS02575 0.85 -3.1
548,364 - ABZR87_RS02575 0.85 +0.4
548,372 + ABZR87_RS02575 0.87 -3.8
548,372 + ABZR87_RS02575 0.87 -4.0
548,373 - ABZR87_RS02575 0.87 -0.4
548,373 - ABZR87_RS02575 0.87 +1.3
548,373 - ABZR87_RS02575 0.87 -1.9
548,501 + +1.7
548,870 + ABZR87_RS02580 0.23 -0.1
548,870 + ABZR87_RS02580 0.23 -2.5
548,870 + ABZR87_RS02580 0.23 -3.2
548,871 - ABZR87_RS02580 0.23 +0.1
548,871 - ABZR87_RS02580 0.23 +0.4
548,871 - ABZR87_RS02580 0.23 -0.5
548,948 + ABZR87_RS02580 0.34 +1.1
548,949 - ABZR87_RS02580 0.34 -0.5
548,949 - ABZR87_RS02580 0.34 +1.6
548,949 - ABZR87_RS02580 0.34 -0.4
548,949 - ABZR87_RS02580 0.34 -0.1
548,955 + ABZR87_RS02580 0.35 -0.3
548,955 + ABZR87_RS02580 0.35 +0.6
548,955 + ABZR87_RS02580 0.35 -2.7
548,955 + ABZR87_RS02580 0.35 -0.1
548,956 - ABZR87_RS02580 0.35 -0.5
548,956 - ABZR87_RS02580 0.35 +0.3
548,956 - ABZR87_RS02580 0.35 +1.0
548,956 - ABZR87_RS02580 0.35 +0.3
548,998 - ABZR87_RS02580 0.41 -0.4
549,096 + ABZR87_RS02580 0.56 -0.8
549,097 - ABZR87_RS02580 0.56 -0.3
549,097 - ABZR87_RS02580 0.56 +0.4
549,129 + ABZR87_RS02580 0.61 -0.2
549,129 + ABZR87_RS02580 0.61 -0.7
549,130 - ABZR87_RS02580 0.61 +0.2
549,130 - ABZR87_RS02580 0.61 -0.5
549,150 + ABZR87_RS02580 0.64 -0.5
549,150 + ABZR87_RS02580 0.64 -2.3
549,150 + ABZR87_RS02580 0.64 -4.5
549,150 + ABZR87_RS02580 0.64 -0.5
549,150 + ABZR87_RS02580 0.64 -0.5
549,150 + ABZR87_RS02580 0.64 +0.5
549,150 + ABZR87_RS02580 0.64 -3.2
549,150 + ABZR87_RS02580 0.64 -0.9
549,150 + ABZR87_RS02580 0.64 +0.1
549,151 - ABZR87_RS02580 0.64 -0.6
549,151 - ABZR87_RS02580 0.64 -0.7
549,151 - ABZR87_RS02580 0.64 -0.6
549,209 + ABZR87_RS02580 0.73 +0.1
549,209 + ABZR87_RS02580 0.73 -2.9
549,209 + ABZR87_RS02580 0.73 +0.8
549,210 - ABZR87_RS02580 0.73 -0.1
549,210 - ABZR87_RS02580 0.73 -1.4
549,210 - ABZR87_RS02580 0.73 -0.1
549,210 - ABZR87_RS02580 0.73 -0.7
549,210 - ABZR87_RS02580 0.73 -0.5
549,249 + ABZR87_RS02580 0.79 +0.4
549,270 + ABZR87_RS02580 0.82 -2.6
549,271 - ABZR87_RS02580 0.82 -0.0
549,271 - ABZR87_RS02580 0.82 -1.8
549,271 - ABZR87_RS02580 0.82 +1.7
549,391 - +0.8
549,391 - +0.2
549,434 + +0.5
549,434 + -0.0
549,434 + -0.4
549,546 - +0.2
549,573 + +0.7
549,573 + +0.5
549,573 + +0.4
549,573 + -0.4
549,573 + -0.4
549,574 - +0.9
549,585 + +1.0
549,654 + -0.7
549,678 + -0.3
549,678 + -0.4
549,678 + +1.2
549,678 + -0.1
549,678 + +1.0
549,679 - +0.1
549,679 - +1.0
549,679 - +0.5
549,679 - -0.0
549,679 - +0.8
549,679 - -1.1
549,679 - -0.3
549,679 - -0.5
549,726 + ABZR87_RS02585 0.10 +0.2
549,727 - ABZR87_RS02585 0.10 +0.3
549,727 - ABZR87_RS02585 0.10 +0.4
549,819 + ABZR87_RS02585 0.18 -0.1
549,819 + ABZR87_RS02585 0.18 -1.2
549,819 + ABZR87_RS02585 0.18 -0.1
549,820 - ABZR87_RS02585 0.18 +0.8
549,820 - ABZR87_RS02585 0.18 +1.5
549,828 + ABZR87_RS02585 0.19 -0.0
549,829 - ABZR87_RS02585 0.19 -0.3
549,835 + ABZR87_RS02585 0.19 -0.2
549,925 + ABZR87_RS02585 0.27 -0.0
549,925 + ABZR87_RS02585 0.27 +0.1
549,926 - ABZR87_RS02585 0.27 +1.7
549,926 - ABZR87_RS02585 0.27 -0.1
550,139 - ABZR87_RS02585 0.46 -0.0
550,152 + ABZR87_RS02585 0.47 +0.9
550,152 + ABZR87_RS02585 0.47 +0.4
550,152 + ABZR87_RS02585 0.47 +0.5
550,152 + ABZR87_RS02585 0.47 +0.0
550,153 - ABZR87_RS02585 0.47 +0.7
550,153 - ABZR87_RS02585 0.47 +0.1
550,153 - ABZR87_RS02585 0.47 +1.9
550,249 + ABZR87_RS02585 0.55 -0.0
550,249 + ABZR87_RS02585 0.55 -0.5
550,249 + ABZR87_RS02585 0.55 +1.7
550,321 - ABZR87_RS02585 0.61 +1.0
550,381 - ABZR87_RS02585 0.66 +0.1

Or see this region's nucleotide sequence