Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01815 and ABZR87_RS01820 are separated by 196 nucleotides ABZR87_RS01820 and ABZR87_RS01825 are separated by 37 nucleotides ABZR87_RS01825 and ABZR87_RS01830 are separated by 332 nucleotides
ABZR87_RS01815: ABZR87_RS01815 - GTPase ObgE, at 386,101 to 387,195
_RS01815
ABZR87_RS01820: ABZR87_RS01820 - 50S ribosomal protein L27, at 387,392 to 387,652
_RS01820
ABZR87_RS01825: ABZR87_RS01825 - 50S ribosomal protein L21, at 387,690 to 388,001
_RS01825
ABZR87_RS01830: ABZR87_RS01830 - octaprenyl diphosphate synthase, at 388,334 to 389,263
_RS01830
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 387.232 kb on - strand at 387.265 kb on - strand at 387.304 kb on - strand at 387.333 kb on - strand at 387.377 kb on + strand at 387.378 kb on - strand at 387.380 kb on + strand at 387.380 kb on + strand at 387.380 kb on + strand at 387.381 kb on - strand at 387.381 kb on - strand at 387.381 kb on - strand at 387.381 kb on - strand at 387.381 kb on - strand at 387.381 kb on - strand at 387.394 kb on - strand at 388.093 kb on - strand at 388.208 kb on + strand at 388.208 kb on + strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.210 kb on + strand at 388.210 kb on + strand at 388.210 kb on + strand at 388.211 kb on - strand at 388.211 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 387,232 - +0.3 387,265 - -1.7 387,304 - +0.1 387,333 - +0.2 387,377 + -0.2 387,378 - +0.8 387,380 + -2.1 387,380 + +0.9 387,380 + -0.7 387,381 - +0.6 387,381 - +1.1 387,381 - -0.4 387,381 - +1.5 387,381 - -2.4 387,381 - +0.2 387,394 - -2.1 388,093 - -0.3 388,208 + +1.6 388,208 + +1.8 388,209 - -3.5 388,209 - -0.4 388,209 - -0.7 388,209 - -1.5 388,209 - +0.9 388,209 - +0.9 388,209 - -0.7 388,209 - +0.6 388,210 + +0.2 388,210 + +0.1 388,210 + -0.4 388,211 - +2.8 388,211 - -0.5
Or see this region's nucleotide sequence